View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5576_low_9 (Length: 341)

Name: NF5576_low_9
Description: NF5576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5576_low_9
NF5576_low_9
[»] chr3 (16 HSPs)
chr3 (1-331)||(2976762-2977094)
chr3 (89-313)||(31886386-31886609)
chr3 (90-331)||(45256336-45256581)
chr3 (96-331)||(33851795-33852029)
chr3 (89-331)||(1846492-1846732)
chr3 (139-331)||(18429591-18429784)
chr3 (90-269)||(5134056-5134233)
chr3 (90-319)||(7589702-7589938)
chr3 (90-269)||(41624716-41624893)
chr3 (90-269)||(5126801-5126978)
chr3 (90-274)||(54093553-54093729)
chr3 (101-229)||(17260316-17260446)
chr3 (1-43)||(33112908-33112950)
chr3 (1-42)||(23774507-23774548)
chr3 (1-41)||(18430001-18430041)
chr3 (1-41)||(33852405-33852445)
[»] chr8 (15 HSPs)
chr8 (5-331)||(38882240-38882555)
chr8 (89-331)||(33749307-33749550)
chr8 (90-331)||(1321311-1321557)
chr8 (89-331)||(31822368-31822611)
chr8 (89-303)||(32823305-32823515)
chr8 (238-331)||(33159507-33159599)
chr8 (170-319)||(38884349-38884504)
chr8 (90-267)||(10268863-10269042)
chr8 (251-331)||(462028-462108)
chr8 (90-267)||(11031992-11032171)
chr8 (239-323)||(24527667-24527753)
chr8 (240-327)||(9186052-9186140)
chr8 (286-331)||(15143421-15143466)
chr8 (1-43)||(8654857-8654899)
chr8 (286-331)||(37803231-37803277)
[»] chr7 (25 HSPs)
chr7 (89-331)||(46995626-46995869)
chr7 (96-331)||(3690997-3691233)
chr7 (90-331)||(47340805-47341047)
chr7 (89-314)||(46811567-46811789)
chr7 (89-331)||(36755887-36756125)
chr7 (89-331)||(36761684-36761922)
chr7 (90-307)||(48456903-48457123)
chr7 (232-331)||(33038335-33038433)
chr7 (90-269)||(6057831-6058008)
chr7 (90-269)||(25972236-25972413)
chr7 (90-228)||(17199970-17200105)
chr7 (278-331)||(38613881-38613934)
chr7 (2-90)||(27955730-27955817)
chr7 (278-331)||(2167890-2167943)
chr7 (286-331)||(23965669-23965714)
chr7 (286-331)||(31914646-31914691)
chr7 (278-326)||(11683271-11683319)
chr7 (1-44)||(23954165-23954208)
chr7 (142-269)||(7402414-7402543)
chr7 (142-269)||(13035223-13035352)
chr7 (219-270)||(367320-367371)
chr7 (1-43)||(2167833-2167875)
chr7 (1-43)||(38613824-38613866)
chr7 (1-43)||(46812305-46812347)
chr7 (295-331)||(23954432-23954468)
[»] chr1 (17 HSPs)
chr1 (89-331)||(46637729-46637972)
chr1 (89-331)||(31802590-31802833)
chr1 (90-331)||(42135250-42135489)
chr1 (90-331)||(47264709-47264948)
chr1 (89-314)||(6576110-6576331)
chr1 (89-314)||(35478930-35479152)
chr1 (139-331)||(45379923-45380116)
chr1 (89-262)||(33682311-33682481)
chr1 (210-331)||(44158412-44158535)
chr1 (90-269)||(43869668-43869845)
chr1 (90-274)||(23172528-23172710)
chr1 (259-313)||(33680105-33680159)
chr1 (1-43)||(18183672-18183714)
chr1 (286-331)||(42559276-42559322)
chr1 (197-269)||(42559354-42559425)
chr1 (286-324)||(18063878-18063916)
chr1 (1-41)||(45380707-45380747)
[»] chr5 (12 HSPs)
chr5 (89-331)||(35399603-35399846)
chr5 (89-331)||(18727527-18727770)
chr5 (89-331)||(32088818-32089061)
chr5 (90-331)||(24497305-24497550)
chr5 (90-269)||(15457884-15458065)
chr5 (142-269)||(27076334-27076463)
chr5 (198-319)||(25509984-25510106)
chr5 (1-43)||(35292109-35292151)
chr5 (1-86)||(43317752-43317837)
chr5 (1-42)||(38177815-38177856)
chr5 (1-42)||(38205039-38205080)
chr5 (288-331)||(19997964-19998008)
[»] chr4 (19 HSPs)
chr4 (90-308)||(35996841-35997060)
chr4 (90-331)||(10371639-10371881)
chr4 (89-331)||(44557444-44557682)
chr4 (90-331)||(2349528-2349770)
chr4 (90-331)||(10767218-10767457)
chr4 (89-303)||(27625734-27625943)
chr4 (90-269)||(50132463-50132635)
chr4 (90-267)||(9590784-9590963)
chr4 (261-331)||(51041578-51041648)
chr4 (90-268)||(44973461-44973637)
chr4 (243-330)||(231062-231150)
chr4 (286-331)||(39294305-39294350)
chr4 (90-269)||(27383113-27383284)
chr4 (1-43)||(4519728-4519770)
chr4 (173-226)||(43822910-43822963)
chr4 (205-269)||(4614106-4614170)
chr4 (285-331)||(27383315-27383361)
chr4 (286-331)||(50132667-50132712)
chr4 (7-43)||(51041655-51041691)
[»] chr2 (15 HSPs)
chr2 (89-313)||(42002480-42002701)
chr2 (89-319)||(91283-91514)
chr2 (89-319)||(36256-36487)
chr2 (89-273)||(29908675-29908858)
chr2 (217-331)||(25620193-25620305)
chr2 (90-269)||(14000855-14001032)
chr2 (100-270)||(40098645-40098813)
chr2 (1-43)||(39883-39925)
chr2 (286-331)||(32607659-32607705)
chr2 (286-331)||(860455-860500)
chr2 (1-42)||(42879676-42879717)
chr2 (222-274)||(62441-62493)
chr2 (217-269)||(4415701-4415753)
chr2 (226-274)||(26584258-26584306)
chr2 (142-190)||(40151284-40151332)
[»] chr6 (5 HSPs)
chr6 (90-331)||(4645472-4645717)
chr6 (90-331)||(29114039-29114281)
chr6 (89-313)||(30640333-30640539)
chr6 (219-331)||(31209851-31209964)
chr6 (286-330)||(25170719-25170763)
[»] scaffold0129 (1 HSPs)
scaffold0129 (288-331)||(5637-5680)
[»] scaffold0204 (1 HSPs)
scaffold0204 (295-331)||(28819-28855)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 2977094 - 2976762
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctcttgtgatcctctagtttttcaagttgctttgttcgtttgtggtaaaattagagttcc 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2977094 aaaaccttctccattctcacctctccaaaatcatcatcatctccggtgatcctctagtttttcaagttgctttgttcgtttgtggtaaaattagagttcc 2976995  T
Q  101 atatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgcttcatggagttt 200  Q
    ||||||||| |||||||||  | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  2976994 atatccaacctatggtccattcggttcgactaaacctactaaattcagggagtttataccaactcccggatttccaaagaagttatgcttcatggagttt 2976895  T
Q  201 aaaatatgcttt--tggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaacttatgacttgt 298  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2976894 aaaatatgcttttatggatttgtaatatttaggcttatttgaattatgcctcatagttgggtttctttttgcttatcttcatttaaaacttatgacttgt 2976795  T
Q  299 taatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||| |||| ||||| |||||    
T  2976794 taatgccccatagttgggttgcttttgtctatg 2976762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 89 - 313
Target Start/End: Complemental strand, 31886609 - 31886386
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  31886609 aattagggttccatatccaacctatggtccacccggttcgactcaacctactaaattcatggagtttataccaacttccggatttccaaagaagtgatgc 31886510  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaact 288  Q
    ||| ||||||||||||  || ||||| |||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||| |||    
T  31886509 ttcgtggagtttaaaagttg-ttttgaatttgtaatatttaggctaattagaattatgcctcatagttgagtttctttttgcttatctttatttaagact 31886411  T
Q  289 tatgacttgttaatgccccatagtt 313  Q
    |||||||||||||||||||||||||    
T  31886410 tatgacttgttaatgccccatagtt 31886386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 90 - 331
Target Start/End: Complemental strand, 45256581 - 45256336
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |    
T  45256581 attagggttccatatccaacctatggtccacccggttcgactcaacctactaaattcatggagtttataccaactcccgaatttccaaagaagtgatgat 45256482  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaac 287  Q
    |  |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    ||||| ||    
T  45256481 tactggagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccgtagttgggtttctttttgcttaacttgccgtttaagac 45256383  T
Q  288 ttatgac---ttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||   ||||||||||| ||||||| ||||| |||||||||||    
T  45256382 ttatgacttgttgttaatgcctcatagttaagttgcttttgcctatg 45256336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 96 - 331
Target Start/End: Complemental strand, 33852029 - 33851795
Alignment:
Q  96 gttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgcttcatgg 195  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||  ||    
T  33852029 gttccatatccaacctatggtc-acccggttcgactcaacctactaaattcatggagtttataccaactcccgaatttccaaagaagtgatgcttcccgg 33851931  T
Q  196 agtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaacttatga 293  Q
    | ||||| | ||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |||    ||||| ||||||||    
T  33851930 a-tttaatagatg-ttttggatttgtaatatttaggcttatttgaattattccccttagtttggtttctttttgcttaacttaccgtttaagacttatga 33851833  T
Q  294 cttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||  |||| |||||| ||||    
T  33851832 cttgttaatgccccatagttaggttgcttttgcttatg 33851795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 89 - 331
Target Start/End: Original strand, 1846492 - 1846732
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaa-ctcccggatttccaaagaactgatg 187  Q
    |||||||||| |||||||||| |||||| ||||| |||| | |||||||    |||||| |||||||||||||| | |||| ||||||||| || |||      
T  1846492 aattagagtttcatatccaacctatggttcacccggttcaaatcaacctc---aattcatggagtttataccaatcccccgaatttccaaaaaagtgaac 1846588  T
Q  188 cttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaac 287  Q
    ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||| ||    
T  1846589 cttcatgaagtttaaaatatactttttgatttgtaatatttaggcttatttgaattatgcctcatagttgggtttcctttcgcttatctttacttaagac 1846688  T
Q  288 ttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    | ||||||||||||||||||||| ||| |||  |||||| ||||    
T  1846689 tcatgacttgttaatgccccataattgggtttcttttgcatatg 1846732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 139 - 331
Target Start/End: Complemental strand, 18429784 - 18429591
Alignment:
Q  139 ctaaattcagggagtttataccaactcccggatttccaaagaactgatgcttcatggagtttaaaatatgcttttggatttgtaatatttaggcttattt 238  Q
    ||||||||| |||||||||||||||||||| |||| ||||||| ||||||||| || ||||||| | ||| |||||||||||||||||||||||||||||    
T  18429784 ctaaattcatggagtttataccaactcccgaattttcaaagaagtgatgcttcctgaagtttaatagatg-ttttggatttgtaatatttaggcttattt 18429686  T
Q  239 gaattatgccccatagttgggtttctttttgcttatct--ttatttaaaacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||| | |||||||||||||||||||||| ||  |  ||||| |||||||||||||||||||| |||||||  |||| |||||||||||    
T  18429685 gaattatgcctcgtagttgggtttctttttgcttaacttgtcgtttaagacttatgacttgttaatgcctcatagttaggttgcttttgcctatg 18429591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 5134056 - 5134233
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  ||||||||| ||||||| ||||||||||   | |||| ||||||||| ||||||| ||| ||||||||||| |||| ||    
T  5134056 attagagtaccatatccaaattatggtccatccagttcaactcaaccta---agttcatggagtttatcccaactctcggctttccaaagaagtgatact 5134152  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    | ||| | ||||||| ||||||||||||  |||||||||| | ||| ||| ||||||||||| |||||| |||||||||||    
T  5134153 tgatgcatgtttaaattatgcttttggaactgtaatatttcgacttgtttaaattatgccccctagttgagtttctttttg 5134233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 319
Target Start/End: Complemental strand, 7589938 - 7589702
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  ||||||  |  | |||||||||||||||   |||||| | ||||||| ||||| |||| |||| ||||||| |||||||    
T  7589938 attagagtaccatatccaagttatggtttattcggttcgactcaaccta---aattcatgaagtttatcccaacccccgaattttcaaagaagtgatgct 7589842  T
Q  190 tcatggag-----tttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccata----gttgggtttctttttgcttatctt-ta 279  Q
    | |||||      |||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||    ||||| ||||||||| | ||| |  ||    
T  7589841 tgatggaaacatatttaaaatatgcttttggaaatgtaatatttagacttgtttgaattatgccccatatatagttggatttctttttacctatgtaata 7589742  T
Q  280 tttaaaacttatgacttgttaatgccccatagttgagttg 319  Q
    ||||| ||||||||||||||||||| ||||||||| ||||    
T  7589741 tttaagacttatgacttgttaatgctccatagttgggttg 7589702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 41624716 - 41624893
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  ||||||||| ||||||| ||||||||||   | |||| ||||||||| |||||| |||| ||||||||||| |||| ||    
T  41624716 attagagtaccatatccaaattatggtccatccagttcaactcaaccta---agttcatggagtttatcccaactgccggctttccaaagaagtgatact 41624812  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    | ||| | ||||||| ||| ||||||||  |||||||||| | ||| ||| ||||||||||| ||||| ||||||||||||    
T  41624813 tgatgcatgtttaaattatacttttggaactgtaatatttcgacttgtttaaattatgccccctagttaggtttctttttg 41624893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 5126801 - 5126978
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||||||  |||||||||  ||||||||| || |||| ||||||||||   | |||| ||||||||| ||||||| ||| ||||||||||| |||| ||    
T  5126801 attagagtatcatatccaaattatggtccatccggttcaactcaaccta---agttcatggagtttatcccaactctcggctttccaaagaagtgatact 5126897  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    | ||| | ||||||| ||||||||||||  |||||||||| | ||| ||| ||||||||||| |||||| |||||||||||    
T  5126898 tgatgcatgtttaaattatgcttttggaactgtaatatttcgacttgtttaaattatgccccctagttgagtttctttttg 5126978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 274
Target Start/End: Original strand, 54093553 - 54093729
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||| ||||||||||||  |||||| || || |||| |||||| |||   | |||| ||||||||| ||||| ||| ||||||||||||| |||| ||    
T  54093553 attagaattccatatccaaattatggttcatccggttcaactcaatcta---agttcatggagtttatcccaacccccagatttccaaagaagtgatact 54093649  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttat 274  Q
    | ||| | ||||| | |||||||||||      ||||||| | ||| ||| ||||||||||| |||||||||||||||||| ||||    
T  54093650 tgatgcatgtttagattatgcttttgg------aatattttgacttgtttaaattatgccccctagttgggtttctttttggttat 54093729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 17260316 - 17260446
Alignment:
Q  101 atatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgcttcatgga---- 196  Q
    ||||||||| ||||||||| |  ||||||||||||   ||||||||| ||||||||| |||||  |||||||| |||| || |||| ||| |||||        
T  17260316 atatccaacttatggtccatctggttcgactcaac---ctaaattcatggagtttatcccaacctccggattttcaaataagtgattcttgatggaaaca 17260412  T
Q  197 -gtttaaaatatgcttttggatttgtaatattta 229  Q
      |||||||||||||||||||  |||||||||||    
T  17260413 tatttaaaatatgcttttggaaatgtaatattta 17260446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33112950 - 33112908
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctc 43  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  33112950 aaaactttctccattctcacctctccaaaatcatcatcatctc 33112908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23774507 - 23774548
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatct 42  Q
    ||||| ||||||||||||||||||| |||| |||||||||||    
T  23774507 aaaactttctccattctcacctctccaaaaccatcatcatct 23774548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18430041 - 18430001
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatc 41  Q
    ||||| ||||||||||||||| ||| |||||||||||||||    
T  18430041 aaaactttctccattctcacccctccaaaatcatcatcatc 18430001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33852445 - 33852405
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatc 41  Q
    ||||| ||||||||||||||| ||| |||||||||||||||    
T  33852445 aaaactttctccattctcacccctccaaaatcatcatcatc 33852405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 331
Target Start/End: Complemental strand, 38882555 - 38882240
Alignment:
Q  5 ccttctccattctcacctctctaaaatcatcatcatctcttgtgatcctctagtttttcaagttgctttgttcgtttgtggtaaaattagagttccatat 104  Q
    ||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||| | |||| || ||||||||||     ||     ||    
T  38882555 ccttctccattttcaccgctccaaaatcatcatcatctcttgcgatcctctagtttttcaagttgttgtgtttgtctgtggtaaaag----gta----at 38882464  T
Q  105 ccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgcttcatggagtttaaaa 204  Q
     ||   |||||||||||| |||||||||||| ||||||||||| ||||||||||| |||  |||||||| ||||||| |||||||||||| |||||||||    
T  38882463 gca---tatggtccacccggttcgactcaacatactaaattcatggagtttatacaaacctccggattttcaaagaagtgatgcttcatgaagtttaaaa 38882367  T
Q  205 tatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaacttatgacttgttaatgc 304  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  38882366 tatgtttttggatttgtaatatttaggcttatttgaattatgccccataactaggtttctttttgcttatctttatttaagacttatgacttgttaatgc 38882267  T
Q  305 cccatagttgagttgtttttgcctatg 331  Q
    |||||| ||| |||| |||||||||||    
T  38882266 cccatatttgggttgcttttgcctatg 38882240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 89 - 331
Target Start/End: Complemental strand, 33749550 - 33749307
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  33749550 aattagggttccatatccaacctatggtccatccggttcgactcaacctactaaattcatggagtttataccaactaccggatttccaaagaagtgatgc 33749451  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaa 286  Q
    ||| || ||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||    ||||| |    
T  33749450 ttcctgaagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgctccatagttgggtttctttttgcttaaattgccgtttaaga 33749352  T
Q  287 cttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||||||||||| |||| |||||||||||    
T  33749351 cttatgacttgttaatgccccatagttgggttgcttttgcctatg 33749307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 90 - 331
Target Start/End: Original strand, 1321311 - 1321557
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccgg----atttccaaagaactga 185  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||     |||||||||||| |||    
T  1321311 attagggttccatatccaacctatggtccacccggttcgactcaacctactaaattcatggagtttataccaactcccgcccgaatttccaaagaagtga 1321410  T
Q  186 tgcttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tattta 283  Q
    |||||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    ||||    
T  1321411 tgcttcctggagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccgtagttgggtttctttttgcttaacttgccgttta 1321509  T
Q  284 aaacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||    
T  1321510 aaacttatgacttgttaatgccccatagttaggttgcttttgcctatg 1321557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 89 - 331
Target Start/End: Original strand, 31822368 - 31822611
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| ||||||||| || ||||||| |||||||||||||||| |||||||||||||||| | ||||| |||||||| ||| ||    
T  31822368 aattagggttccatatccaacctatggtccatccggttcgacccaacctactaaattcatggagtttataccaactgctggattcccaaagaagtgacgc 31822467  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgctt--atctttatttaaaa 286  Q
    ||| |||||||||| | ||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||  |  ||||| |    
T  31822468 ttcctggagtttaatagatg-tttttgatttgtaatatttaggcttatttgaattatgccccacagttgggtttctttttgcttaaattgtcgtttaaga 31822566  T
Q  287 cttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||    
T  31822567 cttacgacttgttaatgccccatagttgggttgcttttgcctatg 31822611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 89 - 303
Target Start/End: Original strand, 32823305 - 32823515
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||||||||||||| |||| |||||||||||| |||||| |||||||    |||||| ||||||||||| ||| ||||||||||||||||| ||| ||    
T  32823305 aattagagttccatattcaacctatggtccacccggttcgaatcaacctc---aattcatggagtttatac-aacccccggatttccaaagaagtgaagc 32823400  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaact 288  Q
    |||||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |    
T  32823401 ttcataaagtttaaaatatgattttgtatttgtaatatttaggcttatttgaattatgccccatagttgggtttccttttgcttatctttatttaagatt 32823500  T
Q  289 tatgacttgttaatg 303  Q
     ||||||| ||||||    
T  32823501 catgacttcttaatg 32823515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 33159599 - 33159507
Alignment:
Q  238 tgaattatgccccatagttgggtttctttttgcttatctttatttaaaacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||    
T  33159599 tgaattatgccc-atagttgggtttctttttgcttatctttatttaagacttatgacttggtaatgccccatagttgggttgttttcgcctatg 33159507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 170 - 319
Target Start/End: Original strand, 38884349 - 38884504
Alignment:
Q  170 atttccaaagaactgatgcttcatggag-----tttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttct 264  Q
    |||||||||||| |||||||| |||||      |||||||||||||||||||  |||||||||||  ||| ||||||||||| | ||| |||||||||||    
T  38884349 atttccaaagaagtgatgcttgatggaaatgtatttaaaatatgcttttggaaatgtaatatttaaacttgtttgaattatgtctcatggttgggtttct 38884448  T
Q  265 ttttgcttat-ctttatttaaaacttatgacttgttaatgccccatagttgagttg 319  Q
    |||||| ||| |  ||||||| ||||||||||||||||||||||||||||| ||||    
T  38884449 ttttgcctatgcaatatttaagacttatgacttgttaatgccccatagttgggttg 38884504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 90 - 267
Target Start/End: Original strand, 10268863 - 10269042
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  ||||||||| |  |||||||||||||||   |||||| ||||||||| ||||| | ||||||||||||||| ||||  |    
T  10268863 attagagtaccatatccaagttatggtccatctggttcgactcaaccta---aattcatggagtttatcccaaccctcggatttccaaagaagtgatttt 10268959  T
Q  190 tcatggag-----tttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttt 267  Q
    | |||||      |||||||||||||||||||  |||||||||||| ||| ||| ||||||||||||||||||| || |||||    
T  10268960 tgatggaaacgtatttaaaatatgcttttggaaatgtaatatttagacttgtttcaattatgccccatagttggattgctttt 10269042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 462108 - 462028
Alignment:
Q  251 atagttgggtttctttttgcttatctttatttaaaacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||  |||||||| |||||||    
T  462108 atagttgggtttctttttgcttatctttatttaagacttgtgacttgttaatgccccataattaggttgttttagcctatg 462028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 267
Target Start/End: Complemental strand, 11032171 - 11031992
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  ||||| ||| |  || ||||||||||||   |||||| ||||||||| ||||| | ||||||||||||||| ||||| |    
T  11032171 attagagtaccatatccaagttatggaccatctggtccgactcaaccta---aattcatggagtttattccaaccctcggatttccaaagaagtgatgtt 11032075  T
Q  190 tcatggag-----tttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttt 267  Q
    |  ||||      |||| ||||||||||||||  |||||||||||| ||| ||| ||||||||||||||||||| || |||||    
T  11032074 tgttggaaacgtatttagaatatgcttttggaaatgtaatatttagacttgtttcaattatgccccatagttggattgctttt 11031992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 24527753 - 24527667
Alignment:
Q  239 gaattatgccccatagttgggtttctttttgcttatcttta--tttaaaacttatgacttgttaatgccccatagttgagttgtttt 323  Q
    |||||||||||| |||||||||||||||||||||| |||    ||||| ||||||||||||||||||||||||||||  ||||||||    
T  24527753 gaattatgccccgtagttgggtttctttttgcttaacttgtcgtttaagacttatgacttgttaatgccccatagttaggttgtttt 24527667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 9186052 - 9186140
Alignment:
Q  240 aattatgccccatagttgggtttctttttgcttatct-ttatttaaaacttatgacttgttaatgccccatagttgagttgtttttgcc 327  Q
    ||||||||||||||||||||||||||||||| ||| |  ||||||| || | |||||||||||| ||||||||||| |||| |||||||    
T  9186052 aattatgccccatagttgggtttctttttgcctatgtaatatttaagacatgtgacttgttaataccccatagttgggttgcttttgcc 9186140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 15143466 - 15143421
Alignment:
Q  286 acttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  15143466 acttatgacttgttaatgccccatagttgaattgcttttgcctatg 15143421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8654857 - 8654899
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctc 43  Q
    ||||| ||||||||||||||| ||| |||||||||||||||||    
T  8654857 aaaactttctccattctcacccctccaaaatcatcatcatctc 8654899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 37803231 - 37803277
Alignment:
Q  286 acttatgacttgttaatgcccc-atagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||||| ||||||| |||| |||||||||||    
T  37803231 acttatgacttgttaatgccccaatagttgggttgcttttgcctatg 37803277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 89 - 331
Target Start/End: Complemental strand, 46995869 - 46995626
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||    
T  46995869 aattagggttccatatccaacctatggtccatccagttcgactcaacctactaaatgcatggagtttataccaactaccggatttccaaagaagtgatgc 46995770  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaa 286  Q
    ||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    ||||| |    
T  46995769 ttcctggagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttaaattaccgtttaaga 46995671  T
Q  287 cttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  46995670 cttatgacttgttaatgccccatagttgggttgtttttgcctatg 46995626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 96 - 331
Target Start/End: Complemental strand, 3691233 - 3690997
Alignment:
Q  96 gttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgcttcatgg 195  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||| |||    
T  3691233 gttccatatccaacctatggtccacccggttcgactcaacctactaaattcatggagtttataccaattcccgaatttccaaagaagtgatgcttcctgg 3691134  T
Q  196 agtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaacttatga 293  Q
    ||||||| | ||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||    ||||| ||||||||    
T  3691133 agtttaatagatg-ttttggatttgtaatatttaagcttatttgaagtatgccccgtagttgggtttctttttgcttaacttgccgtttaagacttatga 3691035  T
Q  294 cttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||  |||| |||||||||||    
T  3691034 cttgttaatgccccatagttaggttgcttttgcctatg 3690997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 90 - 331
Target Start/End: Complemental strand, 47341047 - 47340805
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||    
T  47341047 attagggttccatatccaacctatggtccacccggttcgactcaacctactaaattcatggagtttataccaactcccgaatttccaaagaagtgatgct 47340948  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaac 287  Q
    || |  ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    ||||| ||    
T  47340947 tcctaaagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccgtagttgggtttctttttgcttaacttaccgtttaagac 47340849  T
Q  288 ttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||| |||||||||||||||||||  |||| |||| ||||||    
T  47340848 ttatgatttgttaatgccccatagttaggttgcttttacctatg 47340805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 89 - 314
Target Start/End: Complemental strand, 46811789 - 46811567
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    ||||||||||| ||||||||| |||||||||||  |||||| |||||||    |||| | | ||||||||||||| |||| |||||||||||| ||| ||    
T  46811789 aattagagttctatatccaacctatggtccacctggttcgaatcaacctc---aatttatgaagtttataccaacccccgaatttccaaagaagtgaagc 46811693  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaact 288  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||    
T  46811692 ttcatgaagtttaaaatatgattttggatttgtaatattttggcttatttgaattatgccccatagttgggtttccttttgtttatctttatttaagact 46811593  T
Q  289 tatgacttgttaatgccccatagttg 314  Q
     |||||||||||||| | ||||||||    
T  46811592 catgacttgttaatgtctcatagttg 46811567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 331
Target Start/End: Original strand, 36755887 - 36756125
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    ||||||||||||||||||||| |||||||||||  |||||| |||||||    ||||||  |||||||||| ||| |||||||||| |||| | ||| ||    
T  36755887 aattagagttccatatccaacctatggtccacctggttcgaatcaacctc---aattcaacgagtttatac-aacccccggatttcgaaaggagtgaagc 36755982  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaact 288  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||| |||    
T  36755983 ttcatgaagtttaaaatatgattttggatttgtaatatttaggcttatttgaattatgccccatagttgagtttccttttacttatttttatttaagact 36756082  T
Q  289 tatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
     ||||||| |||||| | |||||||| |||  |||||| ||||    
T  36756083 catgacttattaatgtctcatagttgggtttcttttgcatatg 36756125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 331
Target Start/End: Original strand, 36761684 - 36761922
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    ||||||||||||||||||||| |||||||||||  |||||| |||||||    ||||||  |||||||||| ||| |||||||||| |||| | ||| ||    
T  36761684 aattagagttccatatccaacctatggtccacctggttcgaatcaacctc---aattcaacgagtttatac-aacccccggatttcgaaaggagtgaagc 36761779  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaact 288  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||| |||    
T  36761780 ttcatgaagtttaaaatatgattttggatttgtaatatttaggcttatttgaattatgccccatagttgagtttccttttacttatttttatttaagact 36761879  T
Q  289 tatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
     ||||||| |||||| | |||||||| |||  |||||| ||||    
T  36761880 catgacttattaatgtctcatagttgggtttcttttgcatatg 36761922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 90 - 307
Target Start/End: Original strand, 48456903 - 48457123
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||||||  ||||| |||  ||||||||| || |||||| ||||||||   |||||| ||||||||| ||||| ||| ||||||||||||| |||||||    
T  48456903 attagagtatcatattcaagttatggtccatccggttcgagtcaaccta---aattcacggagtttatcccaacccccagatttccaaagaagtgatgct 48456999  T
Q  190 tcatggag-----tttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatct-ttattta 283  Q
    | |||||      ||||||||||| |||||||  |||||||||||| ||| ||||||||||| ||||||||||||||||||||| | ||| |  ||||||    
T  48457000 tgatggaaacgtatttaaaatatgtttttggaaatgtaatatttagacttgtttgaattatgtcccatagttgggtttctttttacctatgtaatattta 48457099  T
Q  284 aaacttatgacttgttaatgcccc 307  Q
    | ||||||||||||||||||||||    
T  48457100 agacttatgacttgttaatgcccc 48457123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 232 - 331
Target Start/End: Complemental strand, 33038433 - 33038335
Alignment:
Q  232 cttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||    
T  33038433 cttatttgaattatgccc-atagttgggtctctttttacttatctttatttaagacttgtgacttgttaatgccccatagttgggttggttttgcctatg 33038335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 6057831 - 6058008
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  |||||||||||| |||| ||||||||||   | || | ||||||||| ||||| | ||| ||||||||||| |||| ||    
T  6057831 attagagtaccatatccaaattatggtccacccggttcaactcaaccta---agtttatggagtttatcccaaccctcggctttccaaagaagtgatact 6057927  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    | ||  | ||||||| ||||||||||||  |||||||||| | ||| ||| ||||||||||||||||||||||||||||||    
T  6057928 tgatacatgtttaaattatgcttttggaactgtaatatttcgacttgtttaaattatgccccatagttgggtttctttttg 6058008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 269
Target Start/End: Complemental strand, 25972413 - 25972236
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  |||||| || |  |||| ||||||||||   | |||| ||||||||| ||||| ||||  ||||||||||| |||| ||    
T  25972413 attagagtaccatatccaaattatggttcatctggttcaactcaaccta---agttcatggagtttatcccaacccccgactttccaaagaagtgatact 25972317  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    | ||| | ||||||| ||||||||||||  |||||||| | | ||| ||| ||||||||||| ||||||||||||||||||    
T  25972316 tgatgcatgtttaaattatgcttttggaactgtaatatctcgacttgtttaaattatgccccctagttgggtttctttttg 25972236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 228
Target Start/End: Original strand, 17199970 - 17200105
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  ||||||||| | ||||| ||||||||||   | |||| ||||||||| ||||| ||||  ||||||||||| |||| ||    
T  17199970 attagagtaccatatccaaattatggtccatctagttcaactcaaccta---agttcatggagtttatcccaacccccgactttccaaagaagtgatact 17200066  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatattt 228  Q
    | ||| | |||||| ||||||||||||  ||||||||||    
T  17200067 tgatgcattttaaattatgcttttggaactgtaatattt 17200105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 38613881 - 38613934
Alignment:
Q  278 tatttaaaacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||    
T  38613881 tatttaagacttatgacttgttaatgccccatagttgggttgcttttgcctatg 38613934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 27955730 - 27955817
Alignment:
Q  2 aaaccttctccattctcacctctctaaaatcatcatcatctcttgtgatcctctagtttttcaagttgctttgttcgtttgtggtaaaa 90  Q
    |||||||| ||||||||||||||| |||||||||||||||||    ||||||||| ||||| |||||| | ||||||| ||||||||||    
T  27955730 aaaccttc-ccattctcacctctccaaaatcatcatcatctccgacgatcctctaattttttaagttgttgtgttcgtctgtggtaaaa 27955817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 2167890 - 2167943
Alignment:
Q  278 tatttaaaacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||    
T  2167890 tatttaagacttatgacttgttaatgccccataattgggttgcttttgcctatg 2167943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 23965669 - 23965714
Alignment:
Q  286 acttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||    
T  23965669 acttatgacttgttaatgccccatagttgggttgcttttgcctatg 23965714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 31914646 - 31914691
Alignment:
Q  286 acttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||    
T  31914646 acttatgacttgttaatgccccatagttgggttgcttttgcctatg 31914691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 11683271 - 11683319
Alignment:
Q  278 tatttaaaacttatgacttgttaatgccccatagttgagttgtttttgc 326  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||||    
T  11683271 tatttaagatttatgacttgttaatgccccatagttgggttgtttttgc 11683319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23954165 - 23954208
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctct 44  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||    
T  23954165 aaaactttctccattctcacctctccaaaatcatcatcatctct 23954208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 7402414 - 7402543
Alignment:
Q  142 aattcagggagtttataccaactcccggatttccaaagaactgatgcttcatgga-gtttaaaatatgcttttggatt-tgtaatatttaggcttatttg 239  Q
    |||||| ||| ||||| ||||| || | |||| ||||||| |||||||||||    | ||||| ||||||||||||   |||||||||||| ||| | |     
T  7402414 aattcatggaatttatcccaaccccagaattttcaaagaagtgatgcttcatacctgattaaattatgcttttggaaaatgtaatatttagacttgtata 7402513  T
Q  240 aattatgccccatagttgggtttctttttg 269  Q
    ||||||||||| ||||||||||||||||||    
T  7402514 aattatgccccgtagttgggtttctttttg 7402543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 13035223 - 13035352
Alignment:
Q  142 aattcagggagtttataccaactcccggatttccaaagaactgatgcttcatgga-gtttaaaatatgcttttggatt-tgtaatatttaggcttatttg 239  Q
    |||||| ||||||||| ||||| || |||||||||||||| ||  |||| |||   | ||||| ||||||||| ||   | |||||||||| ||| |||     
T  13035223 aattcatggagtttatcccaaccccaggatttccaaagaagtggcgcttgatgtctgcttaaattatgctttttgaaaatataatatttagacttgttta 13035322  T
Q  240 aattatgccccatagttgggtttctttttg 269  Q
    ||||||||||||||||| ||||||||||||    
T  13035323 aattatgccccatagttcggtttctttttg 13035352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 367320 - 367371
Alignment:
Q  219 tgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgc 270  Q
    |||||||||||| ||| ||| ||||||| ||||| |||||||||||||||||    
T  367320 tgtaatatttagacttgtttaaattatgtcccatggttgggtttctttttgc 367371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2167833 - 2167875
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctc 43  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||    
T  2167833 aaaactttctccattctcacctctccaaaatcatcttcatctc 2167875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38613824 - 38613866
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctc 43  Q
    ||||| ||||| ||||||||||||| |||||||||||||||||    
T  38613824 aaaactttctctattctcacctctccaaaatcatcatcatctc 38613866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 46812347 - 46812305
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctc 43  Q
    ||||| ||||||||||||||| ||| |||||||||||||||||    
T  46812347 aaaactttctccattctcacccctccaaaatcatcatcatctc 46812305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 23954432 - 23954468
Alignment:
Q  295 ttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||| |||| |||||||||||    
T  23954432 ttgttaatgccccatagttgggttgcttttgcctatg 23954468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 89 - 331
Target Start/End: Complemental strand, 46637972 - 46637729
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  46637972 aattagggttccatatccaacctatggtccatccggttcgactcaacctactaaattcatggagtttataccaactaccggatttccaaagaagtgatgc 46637873  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgctt--atctttatttaaaa 286  Q
    ||| |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |  ||||| |    
T  46637872 ttcctggagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttaaattgtcgtttaaga 46637774  T
Q  287 cttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||||||||||| |||| |||||||||||    
T  46637773 cttatgacttgttaatgccccatagttgggttgcttttgcctatg 46637729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 89 - 331
Target Start/End: Original strand, 31802590 - 31802833
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| ||||||    
T  31802590 aattagggttccatatccaacctatggtccatccggttcgactcaacctactaaattcatggagtttatatcaactaccggatttccaaagaagtgatgc 31802689  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgctt--atctttatttaaaa 286  Q
    ||| | |||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |  ||||| |    
T  31802690 ttcctagagtttaatagatg-ttttgaatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttaaattgtcgtttaaga 31802788  T
Q  287 cttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||| ||||||||||||||||| |||| |||| ||||||    
T  31802789 cttatgacttattaatgccccatagttgggttgcttttccctatg 31802833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 90 - 331
Target Start/End: Original strand, 42135250 - 42135489
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||| |    
T  42135250 attagggttccatatccaacctatggtccacccggttcgactcaacatactaaattcatggagtttataccaactcccgaatttccaaagaagtgatgat 42135349  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatcttt--atttaaaac 287  Q
    || |||||||||| | ||| ||||| ||||||||||||||||||||||||   |||||||| |||||||||||||||||||||| ||||   ||||| ||    
T  42135350 tcctggagtttaatagatg-ttttgaatttgtaatatttaggcttatttg---tatgccccgtagttgggtttctttttgcttaactttccgtttaagac 42135445  T
Q  288 ttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||| || |||||||  ||||||||||||||||    
T  42135446 ttatgacttgttaatacctcatagttaggttgtttttgcctatg 42135489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 90 - 331
Target Start/End: Complemental strand, 47264948 - 47264709
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||||    |||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  47264948 attagggttccatatccaacctatggtccacccggttcgactcaacctc---aattcatggagtttataccaactcccggatttcccaagaagtgatgct 47264852  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaac 287  Q
    || || ||||||| | ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||   ||||||  |    
T  47264851 tcctgaagtttaatagatg-ttttggatttgtaatatgtaggcttatttgaattatgccccatagttgggtttttttttgcttaacttgccatttaagtc 47264753  T
Q  288 ttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||| | ||| |||| |||||| ||||    
T  47264752 ttatgacttgttaatgccccaaaattgggttgcttttgcttatg 47264709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 89 - 314
Target Start/End: Original strand, 6576110 - 6576331
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    ||||||||||||||||||||| |||||||||||| |||| | |||||||    |||||| ||||||||||| ||| ||||||||| ||||||| |||  |    
T  6576110 aattagagttccatatccaacctatggtccacccggttcaaatcaacctc---aattcatggagtttatac-aacccccggattttcaaagaagtgaaac 6576205  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaact 288  Q
    |||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||    
T  6576206 ttcatgaagtttaaaatatgattttgaatttgtaatacttaggcttatttgaattatgccccatagttgggtttccttttacttatttttatttaagact 6576305  T
Q  289 tatgacttgttaatgccccatagttg 314  Q
     |||||||||||||| | ||||||||    
T  6576306 catgacttgttaatgtctcatagttg 6576331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 314
Target Start/End: Complemental strand, 35479152 - 35478930
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    ||||||||||||||||||||| |||||||||||| |||| | |||||||    |||||| ||||||||||| ||| ||| ||||||||||||| ||| ||    
T  35479152 aattagagttccatatccaacctatggtccacccggttcaaatcaacctc---aattcatggagtttatac-aacccccagatttccaaagaagtgaagc 35479057  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggctt-atttgaattatgccccatagttgggtttctttttgcttatctttatttaaaac 287  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| ||    
T  35479056 ttcatgaagtttaaaatatgattttgaatttgtaatatttaggctttatttgaattacgccccatagttgggtttccttttgcttatctttatttaagac 35478957  T
Q  288 ttatgacttgttaatgccccatagttg 314  Q
    | |||| || |||||| | ||||||||    
T  35478956 tcatgatttcttaatgtctcatagttg 35478930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 139 - 331
Target Start/End: Complemental strand, 45380116 - 45379923
Alignment:
Q  139 ctaaattcagggagtttataccaactcccggatttccaaagaactgatgcttcatggagtttaaaatatgcttttggatttgtaatatttaggcttattt 238  Q
    ||||||||| ||||| |||||||||||||| |||||||||||| ||||||||| || ||||||| | ||| |||||||||||||||||||||| ||||||    
T  45380116 ctaaattcatggagtctataccaactcccgaatttccaaagaagtgatgcttcttgaagtttaatagatg-ttttggatttgtaatatttaggtttattt 45380018  T
Q  239 gaattatgccccatagttgggtttctttttgcttatct--ttatttaaaacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||| | |||||||||||||||||||||| ||  |  ||||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  45380017 gaattatgcctcgtagttgggtttctttttgcttaacttgtcgtttaagacttatgacttgttaatgccccatagttaggttgtttttgcctatg 45379923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 262
Target Start/End: Complemental strand, 33682481 - 33682311
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    ||||||||||||||||||||| |||||||||||| ||| || |||||||    |||||| ||||||||||||||| ||||||||| ||||||| | | ||    
T  33682481 aattagagttccatatccaacctatggtccacccggttagaatcaacctc---aattcatggagtttataccaacccccggattttcaaagaagtaaagc 33682385  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggttt 262  Q
    |||||| ||||||||||||||||| || |||||||||||||||||||||||||||| ||| |||||||| ||||    
T  33682384 ttcatgaagtttaaaatatgctttagggtttgtaatatttaggcttatttgaattacgcctcatagttgtgttt 33682311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 331
Target Start/End: Original strand, 44158412 - 44158535
Alignment:
Q  210 ttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaacttatgacttgttaatgcccc 307  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||    ||||| |||||||||||||||||||| |    
T  44158412 ttttggatttgtaatatttaggcttatttgaattatgccccgtagttgggtttctttttgattaacttgccgtttaagacttatgacttgttaatgcctc 44158511  T
Q  308 atagttgagttgtttttgcctatg 331  Q
    ||||||  |||| |||||||||||    
T  44158512 atagttaggttgcttttgcctatg 44158535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 43869668 - 43869845
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  |||||||||  | |||| ||||||||||   | |||| ||||||||| ||||||| ||| ||||||||||| |||| ||    
T  43869668 attagagtaccatatccaaattatggtccattctgttcaactcaaccta---agttcatggagtttatcccaactctcggctttccaaagaagtgatact 43869764  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    | ||| | ||||||| ||||||||||||  |||||||||| | ||| ||| ||||||||||| ||||||||||||||||||    
T  43869765 tgatgcatgtttaaattatgcttttggaactgtaatatttcgacttgtttaaattatgccccctagttgggtttctttttg 43869845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 90 - 274
Target Start/End: Original strand, 23172528 - 23172710
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  |||| |||| || || ||||||||||||   | |||  ||||||||| ||||| |||| |||| ||||||| |||| ||    
T  23172528 attagagtaccatatccaaattatgatccatccggtccgactcaaccta---agttcgtggagtttatcccaacccccgaattttcaaagaagtgatact 23172624  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttat 274  Q
    | ||| | ||||||| |||| |||||||  |||||||||| | ||| ||| ||||||||||| |||||||||||||||||| ||||    
T  23172625 tgatgcatgtttaaattatgattttggaaatgtaatatttcgacttgtttaaattatgccccctagttgggtttctttttggttat 23172710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 33680159 - 33680105
Alignment:
Q  259 gtttctttttgcttatctttatttaaaacttatgacttgttaatgccccatagtt 313  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  33680159 gtttccttttgcttatctttatttaagactcatgacttgttaatgccccatagtt 33680105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18183714 - 18183672
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctc 43  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  18183714 aaaactttctccattctcacctctccaaaatcatcatcatctc 18183672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 42559322 - 42559276
Alignment:
Q  286 acttatgacttgttaatgccccatagttgagttg-tttttgcctatg 331  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  42559322 acttatgacttgttaatgccccatagttgggttgctttttgcctatg 42559276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 42559425 - 42559354
Alignment:
Q  197 gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    ||||||| |||||||||| | | ||||||||||| ||| ||| |||||||| || ||||||||||||||||||    
T  42559425 gtttaaattatgcttttgaaat-gtaatatttagacttgtttaaattatgctccctagttgggtttctttttg 42559354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 18063916 - 18063878
Alignment:
Q  286 acttatgacttgttaatgccccatagttgagttgttttt 324  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  18063916 acttatgacttgttaatgccccatagttgggttgctttt 18063878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45380747 - 45380707
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatc 41  Q
    ||||| ||||||||||||||| ||| |||||||||||||||    
T  45380747 aaaactttctccattctcacccctccaaaatcatcatcatc 45380707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 89 - 331
Target Start/End: Original strand, 35399603 - 35399846
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| ||||||||| ||  ||||||||||||||||||||||  ||||||||||| ||||||||||||| ||||||| ||||||    
T  35399603 aattagggttccatatccaacctatggtccatccgtttcgactcaacctactaaattcgtggagtttatactaactcccggattttcaaagaagtgatgc 35399702  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaa 286  Q
    ||| |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    |||||||    
T  35399703 ttcctggagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttaacttgccgtttaaaa 35399801  T
Q  287 cttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||    
T  35399802 cttatgacttgttaatgtcccatagttgggttgcttttgcctatg 35399846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 89 - 331
Target Start/End: Complemental strand, 18727770 - 18727527
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| |||| ||||  | ||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||    
T  18727770 aattagggttccatatccaacctatgttccattcggttcgactcaacctactgaattcatggagtttataccaactaccggatttccaaagaagtgatgc 18727671  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatcttt--atttaaaa 286  Q
    ||| |||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||   | ||| |    
T  18727670 ttcctggagtttaatagatg-ttttgaatttgtaatatttaggcttatttgaattatgccacatagttgggtttctttttgcttaaatttccgtataaga 18727572  T
Q  287 cttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||||||||||| |||| |||||||||||    
T  18727571 cttatgacttgttaatgccccatagttgggttgcttttgcctatg 18727527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 89 - 331
Target Start/End: Original strand, 32088818 - 32089061
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| ||||||||| || ||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||| ||||||    
T  32088818 aattagggttccatatccaacctatggtccatccggttcgactcaacctactgaattcatggagtttagaccaactaccggatttccaaagaagtgatgc 32088917  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgctt--atctttatttaaaa 286  Q
    ||| ||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||  |  ||||| |    
T  32088918 ttcctggggtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccatagttgagtttctttttgcttaaattgtcgtttaaga 32089016  T
Q  287 cttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||| ||||||||||||||||| |||| |||||||||||    
T  32089017 cttatgacttattaatgccccatagttgggttgcttttgcctatg 32089061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 331
Target Start/End: Original strand, 24497305 - 24497550
Alignment:
Q  90 attagagttccatatccaac--atatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatg 187  Q
    |||||||| ||||||||||   |||||| ||  || |||||||||||||||   |||||  |||| |||| |||||| |||||||| ||||||| |||||    
T  24497305 attagagtaccatatccaagttatatggcccttccggttcgactcaaccta---aattcgcggagcttatcccaacttccggattttcaaagaagtgatg 24497401  T
Q  188 cttcatggag-----tttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatct-ttatt 281  Q
    ||| |||||      |||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| |  ||||    
T  24497402 cttgatggaaacgtatttaaaatatgcttttggaaatgtaatatttagacttgtttgaattatgccccatagttgggtttctttttgcctatgtaatatt 24497501  T
Q  282 taaaacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||  |||||||||||| ||||| |||||  ||| |||| |||||||||||    
T  24497502 tatgacttatgacttgctaatgtcccatttttg-gttgcttttgcctatg 24497550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 90 - 269
Target Start/End: Complemental strand, 15458065 - 15457884
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  ||| ||||| || |||||||||||||||   |||||| ||||||||| |||||  ||||||||||||| || |||||||    
T  15458065 attagagtaccatatccaagttatagtccatccggttcgactcaaccta---aattcatggagtttatcccaacctccggatttccaaaaaagtgatgct 15457969  T
Q  190 tcatggag-----tttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    | |||||      ||||||||||||||||| |  |||||||||||| ||| ||||||||||| | ||||||||||||||||||||    
T  15457968 taatggaaacatatttaaaatatgcttttgaaaatgtaatatttagacttgtttgaattatgtctcatagttgggtttctttttg 15457884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 27076334 - 27076463
Alignment:
Q  142 aattcagggagtttataccaactcccggatttccaaagaactgatgcttcatgga-gtttaaaatatgcttttggatt-tgtaatatttaggcttatttg 239  Q
    |||||| ||||||||| ||||| ||  ||||| ||||||| ||||| || |||   | ||||| ||||||||||||   |||||||||||| ||| |||     
T  27076334 aattcatggagtttatcccaaccccaagattttcaaagaagtgatgtttgatgcctgattaaattatgcttttggaaaatgtaatatttagacttgttta 27076433  T
Q  240 aattatgccccatagttgggtttctttttg 269  Q
    ||||||||||| ||||||||||||||||||    
T  27076434 aattatgccccctagttgggtttctttttg 27076463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 25510106 - 25509984
Alignment:
Q  198 tttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt-tatttaaaacttatgactt 296  Q
    ||||| ||||||||||| |  ||||||| ||||  || |||| |||||| |||||||||| |||||| ||| | ||| |  ||||||| |||||| ||||    
T  25510106 tttaatatatgcttttgaaaatgtaatacttagaattgtttgcattatgtcccatagttgagtttctctttacctatgtaatatttaagacttataactt 25510007  T
Q  297 gttaatgccccatagttgagttg 319  Q
     ||||||||||||||||| ||||    
T  25510006 attaatgccccatagttgggttg 25509984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35292151 - 35292109
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctc 43  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  35292151 aaaactttctccattctcacctctccaaaatcatcatcatctc 35292109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43317837 - 43317752
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctcttgtgatcctctagtttttcaagttgctttgttcgtttgtggt 86  Q
    ||||| ||||||||||||||||| | |||||||||||||||||  | ||| |||| |||||| || || || |||||| |||||||    
T  43317837 aaaactttctccattctcacctccccaaaatcatcatcatctccggcgattctcttgtttttgaaatttctgtgttcggttgtggt 43317752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38177856 - 38177815
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatct 42  Q
    ||||| ||||||||||||||||||| |||| |||||||||||    
T  38177856 aaaactttctccattctcacctctccaaaaccatcatcatct 38177815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38205080 - 38205039
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatct 42  Q
    ||||| ||||||||||||||||||| |||| |||||||||||    
T  38205080 aaaactttctccattctcacctctccaaaaccatcatcatct 38205039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 19997964 - 19998008
Alignment:
Q  288 ttatgacttgttaatgccccatagttgagtt-gtttttgcctatg 331  Q
    |||||||||||||||||| |||||||| ||| |||||||||||||    
T  19997964 ttatgacttgttaatgcctcatagttgggttggtttttgcctatg 19998008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 90 - 308
Target Start/End: Original strand, 35996841 - 35997060
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |    
T  35996841 attagggttccatatccaacctatggtccacccggttcgactcaacctactaaatttatggagtttataccaactcccggatttccaaagaagtgatgtt 35996940  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatct--ttatttaaaac 287  Q
    || |||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  ||||| ||    
T  35996941 tcttggagtttaatagatg-ttttgaatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttaacttgtcgtttaagac 35997039  T
Q  288 ttatgacttgttaatgcccca 308  Q
    |||||||||||||||||||||    
T  35997040 ttatgacttgttaatgcccca 35997060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 90 - 331
Target Start/End: Complemental strand, 10371881 - 10371639
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| || || |||||||    
T  10371881 attagggttccatatccaacctatggtccacccggttcgactcaacctattaaattcatggagtttataccaactcccggatttcccaacaagtgatgct 10371782  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaac 287  Q
    || || ||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||   ||||||  |    
T  10371781 tcctgaagtttaatagatg-ttttggatttgtaatatttaggcttatttaaattatgccccatagttgggtttctttttgcttaacttgccatttaagtc 10371683  T
Q  288 ttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||| | ||| |||| |||||| ||||    
T  10371682 ttatgacttgttaatgccccaaaattgggttgcttttgcttatg 10371639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 89 - 331
Target Start/End: Complemental strand, 44557682 - 44557444
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||||||    |||||| ||||||||||| ||| ||||||||||||||||| ||| ||    
T  44557682 aattagagttccatatccaacctatggtccacccggttcgaatcaacctc---aattcatggagtttatac-aacccccggatttccaaagaagtgaagc 44557587  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaact 288  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||| |||    
T  44557586 ttcatgaagtttaaaatatgattttggatttgtaatatttaggcttatttgaattatgccccatagttggatttccttttacttatttttatttaagact 44557487  T
Q  289 tatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
     |||||||||||||| | |||||||| |||  |||||| ||||    
T  44557486 catgacttgttaatgtctcatagttgggtttcttttgcatatg 44557444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 90 - 331
Target Start/End: Complemental strand, 2349770 - 2349528
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||    
T  2349770 attagggttccatatccaacctatggtccacccggttcgactcaacctactaaattcatggagtttataccaactctcggatttccaaagaagtgatact 2349671  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatct--ttatttaaaac 287  Q
    || || ||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||  |  ||||| ||    
T  2349670 tcctgaagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgcctcatagttgggtttcttttttcttaacttgtcgtttaagac 2349572  T
Q  288 ttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||| |||||||||||||| | | ||| |||| |||||| ||||    
T  2349571 ttattacttgttaatgccctaaaattgggttgcttttgcttatg 2349528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 90 - 331
Target Start/End: Original strand, 10767218 - 10767457
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||||    |||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  10767218 attagggttccatatccaacctatggtccacccggttcgactcaacctc---aattcatggagtttataccaactcccggatttcccaagaagtgatgct 10767314  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaac 287  Q
    || || ||||||| | ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||   ||||||  |    
T  10767315 tcctgaagtttaatagatg-ttttggatttgtaatatgtaggcttatttgaattatgccccatagttgggtttttttttgcttaacttgccatttaagtc 10767413  T
Q  288 ttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||| | ||| |||| |||||| ||||    
T  10767414 ttatgacttgttaatgccccaaaattgggttgcttttgcttatg 10767457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 89 - 303
Target Start/End: Original strand, 27625734 - 27625943
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||||||||||||| |||| |||||||| || | ||||| |||||||    |||||| ||||||||||| | |||| |||||||||||||| ||| ||    
T  27625734 aattagagttccatattcaacctatggtcccccga-ttcgaatcaacctc---aattcatggagtttatacaacctcc-ggatttccaaagaagtgaagc 27625828  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaact 288  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||| |||    
T  27625829 ttcatgaagtttaaaatatgattttggatttgtaatatttaggcttatttgaattatgccccatagttagatttccttttgcttatttttatttaagact 27625928  T
Q  289 tatgacttgttaatg 303  Q
     ||||||||||||||    
T  27625929 catgacttgttaatg 27625943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 50132463 - 50132635
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  ||||||||| || |||| ||||||||||   | |||| ||||||||| | ||| || || ||||||||||| |||| ||    
T  50132463 attagagtaccatatccaaattatggtccatccggttcaactcaaccta---agttcatggagtttatcctaacccctggctttccaaagaagtgatact 50132559  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    | ||| | ||||||| |||||||||||||||||||||||| | ||| |     ||||||||| ||||||||||||||||||    
T  50132560 tgatgcatgtttaaattatgcttttggatttgtaatatttcgacttgt-----ttatgccccctagttgggtttctttttg 50132635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 267
Target Start/End: Complemental strand, 9590963 - 9590784
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||| ||| ||||||||||  ||||||||| || ||||||||||| |||   |||||| ||||||||| ||||| ||| ||||||||||||| |||||||    
T  9590963 attaaagtaccatatccaagttatggtccatccggttcgactcaatcta---aattcatggagtttatcccaacccccagatttccaaagaagtgatgct 9590867  T
Q  190 tcatg-----gagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttt 267  Q
    | |||     |  ||||||||||||||||| |  ||||||||| || ||| ||||||||| ||  |||||||||||| |||||    
T  9590866 tgatgaaaacgtatttaaaatatgcttttgaaaatgtaatattcagacttgtttgaattaggcttcatagttgggttgctttt 9590784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 51041648 - 51041578
Alignment:
Q  261 ttctttttgcttatctttatttaaaacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||||||| |||| |||||||||||||  ||||||||| ||||||||| ||||||    
T  51041648 ttctttttgcttatctttatttaagacttgtgacttgttaatgttccatagttgggttgttttttcctatg 51041578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 268
Target Start/End: Original strand, 44973461 - 44973637
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||| ||| ||||||||||  ||||||||| || |||  ||||||||||   | |||| ||||||||| |||| |||||| ||||||||||| |||| ||    
T  44973461 attaaagtaccatatccaaattatggtccatccggtttaactcaaccta---agttcatggagtttatcccaaatcccggctttccaaagaagtgatact 44973557  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttcttttt 268  Q
    | ||| | ||||||| |||| |||||||  |||||||||| | ||| ||| ||||||||||| ||| || ||||||||||    
T  44973558 ttatgcatgtttaaattatgtttttggaactgtaatatttcgacttgtttaaattatgccccctagatgagtttcttttt 44973637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 231150 - 231062
Alignment:
Q  243 tatgccccatagttgggtttctttttgcttatctt-tatttaaaacttatgacttgttaatgccccatagttgagttgtttttgcctat 330  Q
    ||||||| |||||||||||||||||||| ||| |  ||||||| |||| |||||||||||||||||||| |||||||  ||||||||||    
T  231150 tatgccctatagttgggtttctttttgcctatgtaatatttaagacttgtgacttgttaatgccccataattgagttacttttgcctat 231062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 39294305 - 39294350
Alignment:
Q  286 acttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  39294305 acttatgacttgttaatgccccatagttgggttgtttttgcctatg 39294350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 27383113 - 27383284
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||||||||||||||  |||||| || || |||| ||||||||||   | |||| ||||||||| ||||| ||||||||| |||||||||||| ||    
T  27383113 attagagttccatatccaaattatggttcatccggttcaactcaaccta---agttcatggagtttatcccaacccccggattttcaaagaactgatact 27383209  T
Q  190 tcatgga-gtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    | ||| | ||||  | |||||||||||      ||||||| | ||| ||| ||||||||||   |||||||||||||||||    
T  27383210 tgatgcatgtttggattatgcttttgg------aatattttgacttgtttaaattatgccctcaagttgggtttctttttg 27383284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4519728 - 4519770
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctc 43  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  4519728 aaaactttctccattctcacctctccaaaatcatcatcatctc 4519770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 43822963 - 43822910
Alignment:
Q  173 tccaaagaactgatgcttcatggagtttaaaatatgcttttggatttgtaatat 226  Q
    ||||||||| |||| ||||||||||||| |||||||| ||||||||||| ||||    
T  43822963 tccaaagaagtgatacttcatggagtttgaaatatgcatttggatttgttatat 43822910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 4614106 - 4614170
Alignment:
Q  205 tatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    |||||||||||| || |||||||| | ||| ||| ||||||||||| ||||||||||| ||||||    
T  4614106 tatgcttttggaattttaatattttgacttgtttaaattatgccccctagttgggtttgtttttg 4614170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 27383315 - 27383361
Alignment:
Q  285 aacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||||||||||||  |||| ||||| |||||    
T  27383315 aacttatgacttgttaatgccccatagtttggttgcttttgtctatg 27383361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 50132667 - 50132712
Alignment:
Q  286 acttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||||||||||  |||| |||| ||||||    
T  50132667 acttatgacttgttaatgccccatagtttggttgctttttcctatg 50132712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 51041691 - 51041655
Alignment:
Q  7 ttctccattctcacctctctaaaatcatcatcatctc 43  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  51041691 ttctccattctcacccctccaaaatcatcatcatctc 51041655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 89 - 313
Target Start/End: Original strand, 42002480 - 42002701
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||||||    |||||| | ||||||||||||| ||||||||| ||||||| |||  |    
T  42002480 aattagagttccatatccaacctatggtccacccggttcgaatcaacctc---aattcatgaagtttataccaacccccggattttcaaagaagtgaaac 42002576  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaact 288  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||    
T  42002577 ttcatgaagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccacatagttgggtttccttttgcttatctttttttaagact 42002676  T
Q  289 tatgacttgttaatgccccatagtt 313  Q
      |||||||||||||||||| ||||    
T  42002677 cgtgacttgttaatgccccacagtt 42002701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 89 - 319
Target Start/End: Complemental strand, 91514 - 91283
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||| ||||||    
T  91514 aattagggttccatatccaacctatggtccatttagttcgactcaacctactaaattcatggagtttataccaattatcggatttccaaagaagtgatgc 91415  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaa 286  Q
    ||| | |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    ||||| |    
T  91414 ttcctagagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttaaattgccgtttaaga 91316  T
Q  287 cttatgacttgttaatgccccatagttgagttg 319  Q
    ||||||||||||||||||| |||||||| ||||    
T  91315 cttatgacttgttaatgcctcatagttgggttg 91283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 89 - 319
Target Start/End: Complemental strand, 36487 - 36256
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||||||| |  | ||||| ||||||| || |||    
T  36487 aattagggttccatatccaacctatggtccatctagttcgactcaacctactaaattcatggagtttataccaattatcagattttcaaagaagtggtgc 36388  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctt--tatttaaaa 286  Q
    ||| | |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    ||||| |    
T  36387 ttcctagagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttaaattgccgtttaaga 36289  T
Q  287 cttatgacttgttaatgccccatagttgagttg 319  Q
    ||||||||||||||||||| |||||||| ||||    
T  36288 cttatgacttgttaatgcctcatagttgggttg 36256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 89 - 273
Target Start/End: Complemental strand, 29908858 - 29908675
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||| |||||||||||||| ||||||||| || |||||| ||||||||||||||||  ||||||||||||||||  || |||||||||||| ||||||    
T  29908858 aattagggttccatatccaacctatggtccatccggttcgattcaacctactaaattcgtggagtttataccaactttcgaatttccaaagaagtgatgc 29908759  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgctta 273  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29908758 ttcatggagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttttttttgctta 29908675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 331
Target Start/End: Original strand, 25620193 - 25620305
Alignment:
Q  217 tttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaacttatgacttgttaatgccccatagttgag 316  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  25620193 tttgtaatatgtaggcttatttgaattatgccc-atagttgggtttctttttgcttatctttatttaagacttgtgacttgttaatgccccatagttggg 25620291  T
Q  317 ttgtttttgcctatg 331  Q
    || ||||||||||||    
T  25620292 tt-tttttgcctatg 25620305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 14000855 - 14001032
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    |||||||| ||||||||||  ||||||||| ||  ||| ||||||||||   | |||| ||||||||| |||||||| || |  |||||||| |||| ||    
T  14000855 attagagtaccatatccaaattatggtccatccgattcaactcaaccta---agttcatggagtttatcccaactcctggctccccaaagaagtgatact 14000951  T
Q  190 tcatggag-tttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    | ||| |  |||||| ||||||||||||  |||||||||| | ||| ||| ||||||||||| ||||||||||||||||||    
T  14000952 tgatgcatatttaaattatgcttttggaactgtaatatttcgacttgtttaaattatgccccctagttgggtttctttttg 14001032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 270
Target Start/End: Original strand, 40098645 - 40098813
Alignment:
Q  100 catatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgcttcatgga-gt 198  Q
    |||||||||| ||||||||| || ||| || ||||| ||   || ||| ||||||||| || || | | ||||||||||||| ||||| || ||| | ||    
T  40098645 catatccaacttatggtccatccggtttgaatcaacata---aactcatggagtttatcccgaccctcagatttccaaagaagtgatgtttgatgtatgt 40098741  T
Q  199 ttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgc 270  Q
    ||||| | ||||||||||  |||||||||||| ||| ||| ||||||||||| |||||||||||||||||||    
T  40098742 ttaaattgtgcttttggaaatgtaatatttagacttgtttaaattatgccccctagttgggtttctttttgc 40098813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39883 - 39925
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatctc 43  Q
    ||||| ||||||||||||||| ||| |||||||||||||||||    
T  39883 aaaactttctccattctcacccctccaaaatcatcatcatctc 39925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 32607705 - 32607659
Alignment:
Q  286 acttatgacttgttaatgcccc-atagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||||| ||||||| |||| |||||||||||    
T  32607705 acttatgacttgttaatgccccaatagttgggttgcttttgcctatg 32607659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 860500 - 860455
Alignment:
Q  286 acttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||| ||| ||||||||| |||| |||||||||||    
T  860500 acttatgacttgttagtgcgccatagttgggttgcttttgcctatg 860455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42879676 - 42879717
Alignment:
Q  1 aaaaccttctccattctcacctctctaaaatcatcatcatct 42  Q
    ||||| ||||||||||||||||||| |||| |||||||||||    
T  42879676 aaaactttctccattctcacctctccaaaaccatcatcatct 42879717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 62493 - 62441
Alignment:
Q  222 aatatttaggcttatttgaattatgccccatagttgggtttctttttgcttat 274  Q
    ||||||| | ||| ||| ||||||||||| |||||||||||||||||| ||||    
T  62493 aatattttgacttgtttaaattatgccccctagttgggtttctttttggttat 62441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 4415753 - 4415701
Alignment:
Q  217 tttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttg 269  Q
    |||| ||||||| | ||| ||| ||||||||||| ||||||||||||||||||    
T  4415753 tttggaatattttgacttgtttaaattatgccccctagttgggtttctttttg 4415701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 26584306 - 26584258
Alignment:
Q  226 tttaggcttatttgaattatgccccatagttgggtttctttttgcttat 274  Q
    ||||| ||| ||| ||||||||||||| |||||||||||||| ||||||    
T  26584306 tttagacttgtttaaattatgccccatggttgggtttcttttcgcttat 26584258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 40151332 - 40151284
Alignment:
Q  142 aattcagggagtttataccaactcccggatttccaaagaactgatgctt 190  Q
    |||||| ||||||||| ||||| || |||||||||||||| ||||||||    
T  40151332 aattcatggagtttatcccaacaccaggatttccaaagaagtgatgctt 40151284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 90 - 331
Target Start/End: Original strand, 4645472 - 4645717
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  4645472 attagggttccatatccaacctatggtccacccggttcgactcaacctattaaattcatggagtttataccaactcccggatttccaaagaagtgatgct 4645571  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgg---gtttctttttgcttatctt--tatttaa 284  Q
    || || ||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||| |||   ||||||    
T  4645572 tcctgaagtttaatagatg-ttttggatttgtaatatttaggcttatttgaattatgccccatagttggtttttttttttttgcttaacttgccatttaa 4645670  T
Q  285 aacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
      |||||||||||||||||||||| | ||| ||||||||||| ||||    
T  4645671 gtcttatgacttgttaatgccccaaaattgggttgtttttgcttatg 4645717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 331
Target Start/End: Original strand, 29114039 - 29114281
Alignment:
Q  90 attagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgct 189  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||||    |||||| ||||||||||||||||||||||||| | ||||| |||||||    
T  29114039 attagggttccatatccaacctatggtccacccggttcgactcaacctc---aattcatggagtttataccaactcccggattttccaagaagtgatgct 29114135  T
Q  190 tcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgg---gtttctttttgcttatctt--tatttaa 284  Q
    || || ||||||| | ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||    ||| |||||||||| |||   ||||||    
T  29114136 tcctgaagtttaatagatg-ttttgaatttgtaatatgtaggcttatttgaattatgccccatagttggtttttttttttttgcttaacttgccatttaa 29114234  T
Q  285 aacttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
      |||||||||||||||||||||| | ||| |||| |||||| ||||    
T  29114235 gtcttatgacttgttaatgccccaaaattgggttgcttttgcttatg 29114281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 89 - 313
Target Start/End: Complemental strand, 30640539 - 30640333
Alignment:
Q  89 aattagagttccatatccaacatatggtccacccagttcgactcaacctactaaattcagggagtttataccaactcccggatttccaaagaactgatgc 188  Q
    |||||||||| |||||||||| ||||||||| || |||||| |||||||    |||||| ||||||||||||||| ||||||||||||| ||| ||| ||    
T  30640539 aattagagtttcatatccaacctatggtccatccggttcgaatcaacctc---aattcatggagtttataccaacccccggatttccaatgaagtgaagc 30640443  T
Q  189 ttcatggagtttaaaatatgcttttggatttgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatctttatttaaaact 288  Q
    |||||| |||| |||||||| ||||||               ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||    
T  30640442 ttcatgaagttcaaaatatgattttgg---------------gcttatttgaattatgccccatagttgggtttccttctacttatctttatttaagact 30640358  T
Q  289 tatgacttgttaatgccccatagtt 313  Q
     |||||||||||||| |||||||||    
T  30640357 catgacttgttaatgtcccatagtt 30640333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 219 - 331
Target Start/End: Original strand, 31209851 - 31209964
Alignment:
Q  219 tgtaatatttaggcttatttgaattatgccccatagttgggtttctttttgcttatct-ttatttaaaacttatgacttgttaatgccccatagttgagt 317  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||| |  |||| || |||||||||||||||||||| |||||||| ||    
T  31209851 tgtaatatttagacttgtttgaattatgccccatagctgggtttctttttgcctatgtaatattgaagacttatgacttgttaatgcctcatagttgggt 31209950  T
Q  318 tgtttttgcctatg 331  Q
    || |||||||||||    
T  31209951 tgattttgcctatg 31209964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 25170763 - 25170719
Alignment:
Q  286 acttatgacttgttaatgccccatagttgagttgtttttgcctat 330  Q
    |||||||||||||||||||||||||| || |||| |||| |||||    
T  25170763 acttatgacttgttaatgccccataggtgggttgctttttcctat 25170719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 5637 - 5680
Alignment:
Q  288 ttatgacttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    ||||||||||||||||||||||||||| |||  |||||||||||    
T  5637 ttatgacttgttaatgccccatagttgggttacttttgcctatg 5680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 28855 - 28819
Alignment:
Q  295 ttgttaatgccccatagttgagttgtttttgcctatg 331  Q
    |||||||||||||||||||| |||| |||||||||||    
T  28855 ttgttaatgccccatagttgggttgcttttgcctatg 28819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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