View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5577-Insertion-2 (Length: 854)
Name: NF5577-Insertion-2
Description: NF5577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5577-Insertion-2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 687; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 7 - 843
Target Start/End: Original strand, 38725219 - 38726054
Alignment:
| Q |
7 |
agccagtgctcaacaaaagttagaagatnnnnnnncagaattagagaagcactctttggtgaagaaacctgacatgaaatctgtgcattcaacagaatca |
106 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725219 |
agccagtgctcaacaaaagttagaagataaaaaaacagaattagagaagcactctttggtgaagaaacctgacatgaaatctgtgcattcaacagaatca |
38725318 |
T |
|
| Q |
107 |
actacatggagtaaagatgatgtatcaggcgagtttaccaaaatgagattggtatgtcaaaggccattgccaaaatcttttctttgcctgggttatgagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725319 |
actacatggagtaaagatgatgtatcaggcgagtttaccaaaatgagattggtatgtcaaaggccattgccaaaatcttttctttgcctgggttatgagg |
38725418 |
T |
|
| Q |
207 |
gatggaaagtgaagtgattaatttgcatcctatctaggtagaatgtagaatatagatgaaataaatgatatattgctattttagatttcattccatgtgt |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38725419 |
gatggaaagtgaagtgattaatttgcatcctatctaggtagaatgtagaatatagatgaaataaatgatatattgctattttagatttcat-----gtgt |
38725513 |
T |
|
| Q |
307 |
gtgtaacagtgttannnnnnnnnnnncctttctggtggtggtaaatgttttttaagaaactggttggttgaaatatatattagttgtctagaaattctag |
406 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725514 |
gtgtaacagtgttatttttattttttcctttctggtggtggtaaatggtttttaggaaactggttggttgaaatatatattagttgtctagaaattctag |
38725613 |
T |
|
| Q |
407 |
tatgaattggttgatcaattttccttacaatctccttctgcaactctccctttaagtgcatattttcggcaaaactacactttggagcttcaacaaaatc |
506 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38725614 |
tatgaattggttgatcaattttccttacaatctccttctgccactctccctttaagtgcatattttcggcaaaactactctttggagcttcaacaaaatc |
38725713 |
T |
|
| Q |
507 |
acactgccgttatgattcagtcaaactcactataattctaaacatgcatgag-ccttccaatttt-cttctatgtgaactcg-agcgtgctaatatgaga |
603 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
38725714 |
acactgccgttatgattcggtcaaactcactataattctaaacatgcatgagcccttccaattttccttctatgtgaactcgaagcgtgctaatatgaga |
38725813 |
T |
|
| Q |
604 |
atataagatgaattctaatcattctatatattgtggaatgaatattctatgcaatcagtgcataagtgattaatttacattgattgaaatcagataaaca |
703 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38725814 |
atataagatgaattctaatcattctatatattgtggaatgaatattctatgcaatcagtgcataagtgattaatttacattgattgaaatcagataaaca |
38725913 |
T |
|
| Q |
704 |
agcttaaaaatttccatgnnnnnnnttgtgataatgaaaagggggaaattaaataggataggctcaatgttcctttggctgaatgagaatcctattcccc |
803 |
Q |
| |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725914 |
agcctaaaaatttccatgaaaaaaattgtgataatgaaaagggggaaattaaataggataggctcaatgttcctttggctgaatgagaatcctattcccc |
38726013 |
T |
|
| Q |
804 |
cttttctcaaatgcagaagaatctgct-aataagaatacca |
843 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
38726014 |
cttttctcaaatgcagaagaatctgctaaataagaatacca |
38726054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 477 - 551
Target Start/End: Complemental strand, 42160084 - 42160010
Alignment:
| Q |
477 |
aaaactacactttggagcttcaacaaaatcacactgccgttatgattcagtcaaactcactataattctaaacat |
551 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| |||| ||||||| |||||||| ||| |||||| |||||| |
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|
| T |
42160084 |
aaaactacaccatggagcttccacaaaatcacagtgccactatgattttgtcaaacttactgtaattccaaacat |
42160010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 514
Target Start/End: Original strand, 38692796 - 38692833
Alignment:
| Q |
477 |
aaaactacactttggagcttcaacaaaatcacactgcc |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
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|
| T |
38692796 |
aaaactacactttggagcttcaacaaaatcacagtgcc |
38692833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 535
Target Start/End: Complemental strand, 10172583 - 10172530
Alignment:
| Q |
482 |
tacactttggagcttcaacaaaatcacactgccgttatgattcagtcaaactca |
535 |
Q |
| |
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||||||||||||||||||||||||| | |||| |||||||| |||||||||| |
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|
| T |
10172583 |
tacactttggagcttcaacaaaatcgcgatgccattatgatttcgtcaaactca |
10172530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 535
Target Start/End: Complemental strand, 10180108 - 10180055
Alignment:
| Q |
482 |
tacactttggagcttcaacaaaatcacactgccgttatgattcagtcaaactca |
535 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||||| |||||||||| |
|
|
| T |
10180108 |
tacactttggagcttcaacaaaatcgcgatgccattatgatttcgtcaaactca |
10180055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 535
Target Start/End: Complemental strand, 10185148 - 10185095
Alignment:
| Q |
482 |
tacactttggagcttcaacaaaatcacactgccgttatgattcagtcaaactca |
535 |
Q |
| |
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||||||||||||||||||||||||| | |||| |||||||| |||||||||| |
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|
| T |
10185148 |
tacactttggagcttcaacaaaatcgcgatgccattatgatttcgtcaaactca |
10185095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 554
Target Start/End: Original strand, 50229997 - 50230074
Alignment:
| Q |
477 |
aaaactacactttggagcttcaacaaaatcacactgccgttatgattcagtcaaactcactataattctaaacatgca |
554 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||| ||||||| |||||| | ||| | ||||||||| |||| |
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| T |
50229997 |
aaaactacactttgtagcttcaacaaaatcatagtgccagtatgattttgtcaaatttactgtgattctaaacttgca |
50230074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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