View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5577-Insertion-3 (Length: 620)
Name: NF5577-Insertion-3
Description: NF5577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5577-Insertion-3 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Original strand, 16078186 - 16078717
Alignment:
| Q |
8 |
gttttaagtcaagttttttgttgaatatttcatcattcatttctctgatggtctaannnnnnncttgacatgaaaccacataagatgaaaagaatttatg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16078186 |
gttttaagtcaagttttttgttgaatatttcatcattcatttctctgatggtctaatttttttcttgacatgaaaccacataagatgaaaagaatttatg |
16078285 |
T |
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| Q |
108 |
ctgaccgaccagtggtggattatctgtatatttcaaattatgtgcgcgaggtgaaggtaagttatattatggattctttcacacatatatattttttgaa |
207 |
Q |
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| T |
16078286 |
ctgaccggccagtggtggattatcggtatatttcaaattatgtgcgcgaggtgaaggtaagttatattatggattctttcccacatatatattttttgaa |
16078385 |
T |
|
| Q |
208 |
tgtagagttatcaattatattttgtagttttgatgagcctaatagannnnnnnnnncttcatgcagaatcgatttcaacatgctgatcatcgtcatgtat |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16078386 |
tgtagaattatcaattatattttgtagttttgatgagcctaatagatatattttt--ttcatgcagaatcgatttcaacatgctgatcatcgtcatgtat |
16078483 |
T |
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| Q |
308 |
atttgtcgtttctagagatgctgtcaaagtatatagaaagagagaagactgttggtaatgttactagtgaggtatgtattgtttatgtgaaatgatatcg |
407 |
Q |
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| T |
16078484 |
atttgtcgtttctagagatgctgtcaaagtatatagaaagagagaagactgttggtaatgttattagtgaggtatgtgttgtttatgtgaaatgatatcg |
16078583 |
T |
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| Q |
408 |
ataaaattattttgaaacaactttaaaaaatannnnnnnattggaaaaaaacaatagagtgtgaaatagggatagagnnnnnnnnnnnnnnnttgtttat |
507 |
Q |
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| T |
16078584 |
ataaaatcattttgaaacaacttt-aaaaatatttttttattggaaaaaaacaat--agtgtgaaataaggatagag-aaaaaaagtaaaaattgtttat |
16078679 |
T |
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| Q |
508 |
gtcatgtggtcaaaattacaattgagataccataaaaa |
545 |
Q |
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| T |
16078680 |
gtcatgtggtcaaaattacaattgagataccataaaaa |
16078717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 16067938 - 16068128
Alignment:
| Q |
11 |
ttaagtcaagttttttgttgaatatttcatcattcatttctctgatggtctaannnnnnncttgacatgaaaccacataagatgaaaagaatttatgctg |
110 |
Q |
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| T |
16067938 |
ttaagtcaagttttt-gttgaatattttatcattcatttctctaatagtctaaaatttttcttgacatgaaaccgcagaagatgaaaagaatatacgcta |
16068036 |
T |
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| Q |
111 |
accgaccagtggtggattatctgtatatttcaaattatgtgcgcgaggtgaaggtaagttatattatggattctttcacacatatatatttt |
202 |
Q |
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| T |
16068037 |
accggccagtggtggattatgaatatgttgcgagatatgtgatgaaggtgaaggtaagttatattatggattctttcacacatatatgtttt |
16068128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 511 - 619
Target Start/End: Original strand, 16068297 - 16068404
Alignment:
| Q |
511 |
atgtggtcaaaattacaattgagataccataaaaaatattattgctatcataattaattgcacctctaaactacaattacatatatgcc-ttttattttt |
609 |
Q |
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||||||||||||| |||||||||||||||| ||||||| ||||||||||| |||||| |||| || ||||||||||||||||||||||| |||||||||| |
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| T |
16068297 |
atgtggtcaaaatgacaattgagataccat-aaaaatactattgctatcacaattaa-tgcagctataaactacaattacatatatgcctttttattttt |
16068394 |
T |
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| Q |
610 |
ctttcctctt |
619 |
Q |
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| T |
16068395 |
ctttcctctt |
16068404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 16071226 - 16071335
Alignment:
| Q |
21 |
ttttttgttgaatatttcatcattcatttctctgatggtctaannnnnnncttgacatgaaaccacataagatgaaaagaatttatgctgaccgaccagt |
120 |
Q |
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| T |
16071226 |
ttttttgttgaatattttatcattcatttctctaatagtctaaattttttcttgacataaaataacagaagatgaaaagaacatatgctgaccggccagt |
16071325 |
T |
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| Q |
121 |
ggtggattat |
130 |
Q |
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| T |
16071326 |
ggtggattat |
16071335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 500 - 545
Target Start/End: Complemental strand, 13014 - 12969
Alignment:
| Q |
500 |
ttgtttatgtcatgtggtcaaaattacaattgagataccataaaaa |
545 |
Q |
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| T |
13014 |
ttgtttatgtcatatggtcaaaattacaattgaggtaccttaaaaa |
12969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 500 - 545
Target Start/End: Original strand, 12721128 - 12721173
Alignment:
| Q |
500 |
ttgtttatgtcatgtggtcaaaattacaattgagataccataaaaa |
545 |
Q |
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||||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
12721128 |
ttgtttatgtcatatggtcaaaattacaattgaggtaccttaaaaa |
12721173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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