View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5577-Insertion-5 (Length: 154)
Name: NF5577-Insertion-5
Description: NF5577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5577-Insertion-5 |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 20840338 - 20840193
Alignment:
| Q |
9 |
tgcgcttccacttcaggtgatggctccgttttcgcatcaggtgatggttgcgcgtccacttcaggtattggttcaatttccacagcagttggctgaccat |
108 |
Q |
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| T |
20840338 |
tgcgcttccacttcaggtgatggctccgttttcgcatcaggtgatggttgcgcgtccacttcaggtattggttcaatttccacagcagttggctgaccat |
20840239 |
T |
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| Q |
109 |
atataagatacgcagccgtctccttaacgataaatccatgcccaat |
154 |
Q |
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| T |
20840238 |
atataagatacgcagccgtctccttaacagtaaatccatgcccaat |
20840193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 20813899 - 20813754
Alignment:
| Q |
9 |
tgcgcttccacttcaggtgatggctccgttttcgcatcaggtgatggttgcgcgtccacttcaggtattggttcaatttccacagcagttggctgaccat |
108 |
Q |
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| T |
20813899 |
tgcgcttccacttcaggtgatggctccgtttacgcatcaggtgatgattgcgcgtccacttcaggtattggttcaatttccacagcagttggctgaccat |
20813800 |
T |
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| Q |
109 |
atataagatacgcagccgtctccttaacgataaatccatgcccaat |
154 |
Q |
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| T |
20813799 |
atataagatacgcagccgtctccttaacagtaaatccatgcccaat |
20813754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 12597356 - 12597282
Alignment:
| Q |
13 |
cttccacttcaggtgatggctccgttttcgcatcaggtgatggttgcgcgtccacttcaggtattggttcaattt |
87 |
Q |
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| T |
12597356 |
cttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaattt |
12597282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 1e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 3396751 - 3396896
Alignment:
| Q |
9 |
tgcgcttccacttcaggtgatggctccgttttcgcatcaggtgatggttgcgcgtccacttcaggtattggttcaatttccacagcagttggctgaccat |
108 |
Q |
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| T |
3396751 |
tgcgcttccgctccaggggatgactccgttttcacatcgagtgatggttgcacctccacttcaggtattggttcaatttccatagcagctggctgaccat |
3396850 |
T |
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| Q |
109 |
atataagatacgcagccgtctccttaacgataaatccatgcccaat |
154 |
Q |
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| T |
3396851 |
atattagatagacagccgtctccttaacagtcaatccatgcccaat |
3396896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 31177914 - 31177843
Alignment:
| Q |
19 |
cttcaggtgatggctccgttttcgcatcaggtgatggttgcgcgtccacttcaggtattggttcaatttcca |
90 |
Q |
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| T |
31177914 |
cttcagctgatggctccgttttcacattaggtgatggttgcatttccacttcatgtaatggctcaatttcca |
31177843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 3405681 - 3405764
Alignment:
| Q |
12 |
gcttccacttcaggtgatggctccgttttcgcatcaggtgatggttgcgcgtccacttcaggtattggttcaatttccacagca |
95 |
Q |
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| T |
3405681 |
gcttccactccaggtgatagttccattaccacatcaggtgatgattgcacctgcacttcaggtattggttcaacttccatagca |
3405764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 43 - 153
Target Start/End: Original strand, 14765717 - 14765827
Alignment:
| Q |
43 |
catcaggtgatggttgcgcgtccacttcaggtattggttcaatttccacagcagttggctgaccatatataagatacgcagccgtctccttaacgataaa |
142 |
Q |
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| T |
14765717 |
catcaggagatggttgcgcagccacttcaagtattggttcaatttccattgtagtcaactgaccatatattagatagacagccgtctccttaattatcaa |
14765816 |
T |
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| Q |
143 |
tccatgcccaa |
153 |
Q |
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| T |
14765817 |
tccgtgcccaa |
14765827 |
T |
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