View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5577_high_2 (Length: 452)
Name: NF5577_high_2
Description: NF5577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5577_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 38725222 - 38724786
Alignment:
| Q |
1 |
ggctttacccttttttgaattcccaaagaaaaacttctttatactttctatcttcttattccttttccaaaatccaccgcttttgttatcatctttcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
38725222 |
ggctttacccttttttgaattcccaaagaaaaacttctttatactttctatcttcttattccttttccaaaatccacctcttttgttctcatctttcttt |
38725123 |
T |
|
| Q |
101 |
atctccttagcaacattagaaaccaaagtcttctttgactcaagctcaaagtttgtatcattagccacttccacttgtctcgtctgtcttgcaaatgcca |
200 |
Q |
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| T |
38725122 |
atctccttagcaacattagaaaccaaagtcttctttgactcaagctcaaagtttgtatcattagccacttccacttgtctcgtctgtcttgcaaatgcca |
38725023 |
T |
|
| Q |
201 |
atccttttggctcagataccatattttctctttctgattcttccttcattggctcttccagaagctcgcgtaacatctgaccttctggaaaagacattaa |
300 |
Q |
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| T |
38725022 |
atccttttggctcagataccatattttctctttctgattcttccttcattggctcttccagaagctcacgtaacatctgaccttctggaaaagacattaa |
38724923 |
T |
|
| Q |
301 |
aggaagtttttcacaacaatgcgattgatcatgtttatgtgactctgatagtccctcatgtttgtcacatttactgttgaagaccctcaatggagaaagg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38724922 |
aggaagtttttcacaacaatgcgattgatcatgtttatgtgactctgatagtccctcatgtttgtcacatttgctgttgaagaccctcaatggagaaagg |
38724823 |
T |
|
| Q |
401 |
gatctagtccttcttaaaccatgttctctaccctttg |
437 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
38724822 |
gatctagtccttcttaaaccatattctctaccctttg |
38724786 |
T |
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