View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5577_high_3 (Length: 394)
Name: NF5577_high_3
Description: NF5577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5577_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 8361617 - 8361966
Alignment:
| Q |
20 |
gttgaaagtgggagctggcaattgtctcgtttcagtagcctttgagattataccatcctttcttccttttggtacttcccaatttggccctccggactaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8361617 |
gttgaaagtgggagctggcaattgtctcgtttcagtagcctttgagattataccatcctttcttccttttggtacttcccaatttggccctccggactaa |
8361716 |
T |
|
| Q |
120 |
ttaatgacatatatgacactcaaaaaatgtatt---aattgttactgcaacgtaacctttaaattatcataaaattcatatcatcatttgtgattgtgac |
216 |
Q |
| |
|
| ||||| ||||||||||||||||||| | ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
8361717 |
t----gacat----gacactcaaaaaatgtattgttatttgttactgcaac-----ctttaaattattataa--ttcatatcatcatttgtgattgtgac |
8361801 |
T |
|
| Q |
217 |
ttaccagagtgacagcgtccctagcagcaagagccaagatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaat |
316 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8361802 |
ttaccagagtgacagcgtctctagcagcaagagccaaaatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaat |
8361901 |
T |
|
| Q |
317 |
tacataaaatgcatgcaatgatatgtttggaggtccatccttttctgctttattattctttccctttg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8361902 |
tacataaaatgcatgcaatgatatgtttggaggtccatccttttctgctttat---tctttccctttg |
8361966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 9058591 - 9058670
Alignment:
| Q |
288 |
gcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtccatccttttctgcttt |
367 |
Q |
| |
|
||||| ||||||||||| || | |||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
9058591 |
gcttctaatgctttctttgcttcatcaatgacatagaatgcatgcaatgaaatgtttggcggtccatccttttctgcttt |
9058670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 367
Target Start/End: Complemental strand, 31748206 - 31748067
Alignment:
| Q |
228 |
acagcgtccctagcagcaagagccaagatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatg |
327 |
Q |
| |
|
||||| ||||| || |||| ||| ||||||||||||||||| || || || || ||| | ||||| ||||||||||| ||||||||||| | | | |||| |
|
|
| T |
31748206 |
acagcatcccttgctgcaaaagctaagatatcagcacaagagactacaccagggcaagcagcttctaatgctttctttgcattatcaatgataaagaatg |
31748107 |
T |
|
| Q |
328 |
catgcaatgatatgtttggaggtccatccttttctgcttt |
367 |
Q |
| |
|
||||||| ||| ||||| |||||||| ||||||||||| |
|
|
| T |
31748106 |
catgcaaagatgcatttggtggtccatctttttctgcttt |
31748067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 274
Target Start/End: Complemental strand, 37111348 - 37111313
Alignment:
| Q |
239 |
agcagcaagagccaagatatcagcacaagacacgac |
274 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37111348 |
agcagcaagagccaaaatatcagcacaagacacgac |
37111313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University