View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5577_high_4 (Length: 276)
Name: NF5577_high_4
Description: NF5577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5577_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 49954447 - 49954260
Alignment:
| Q |
17 |
actttcaaagctctttatcttctaccatcactcaactagcctctatattgcagtctcaaactgaaagtctcacaaattttgtggaaacctctagttttat |
116 |
Q |
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| T |
49954447 |
actttcaaagctctttatcttctaccatcactcaactagcctctatattgcagtctcaaactgaaagtctcacaaattttgtggaaacctctagttttat |
49954348 |
T |
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| Q |
117 |
cttcccttctaaaagaaagggtgtttatctcatatcactctctgtcggtacaatcatgtaggtcttcccccactatactactacacct |
204 |
Q |
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| T |
49954347 |
cttcccttctaaaagaaagggtgtttttctcatatcactctctgtcggtacaatcatgtaggtcttcccccactatactactacacct |
49954260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 49976404 - 49976438
Alignment:
| Q |
17 |
actttcaaagctctttatcttctaccatcactcaa |
51 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
49976404 |
actttcaaagctctttatcttctacaatcactcaa |
49976438 |
T |
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