View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5577_low_2 (Length: 545)
Name: NF5577_low_2
Description: NF5577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5577_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Original strand, 26209453 - 26209883
Alignment:
| Q |
20 |
tgaacgccgccgcaacctccacctctctcatgtgctatatgtgtttgttttgtccctcgagttctcaccgctctctctctccctcgaggtttctcacaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
26209453 |
tgaacgccgccgcaacctccacctctctcatgtgctatatgtgtttgttttgtccctcgagttctcactgttctctctctccctcgaggtttctcacaat |
26209552 |
T |
|
| Q |
120 |
caacggcgaacacggtcgtcaccgtcttcaataaaacagatctgatgtctgatgtagtggtgatctgaacggaactccggcgacgagagagagaagaaga |
219 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26209553 |
caacggcgaacacagtcgtcaccatcttcaacaaaacagatatgatgtccgatgtagtggtgatctgaacggaactccggcgacgagagagagaagaaga |
26209652 |
T |
|
| Q |
220 |
tttttcgtcgccgcgttcagatttgaacggcttgatggtgaggacggtgttggttaccactgatgaaggccgacgatcattgtgaggatgcaggctgcgg |
319 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
26209653 |
ttcgtcgtcgccgcgttcaaatttgaacggcttgatggtgaggacggtgttggttaccactgatgaaggccgacaatcattgtgaggatgcaggctgcgg |
26209752 |
T |
|
| Q |
320 |
tgggcgaggacggcggtggttatgagaatggtgctgtcgtgaggaaaagatagaatgcagggaagatgggagtatgaagaagatgggtctgtggaaattt |
419 |
Q |
| |
|
||| | |||||||| ||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
26209753 |
tggtc-aggacggccgtggttaggagaatggtgttgtcgtgaggaacagagagaatgcagggaagatgggagtaggaagaagatgggtctgtggggattt |
26209851 |
T |
|
| Q |
420 |
gacaaaactgcccctgcttaatggtggaaata |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26209852 |
gacaaaactgcccctgcttaatggtggaaata |
26209883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Original strand, 16136263 - 16136692
Alignment:
| Q |
20 |
tgaacgccgccgcaacctccacctctctcatgtgctatatgtgtttgttttgtccctcgagttctcaccgctctctctctccctcgaggtttctcacaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
16136263 |
tgaacgccgccgcaacctccacctctctcatgtgctatatgtgtttgttttgtctctcgagttctcactgttctctctctccctcgaggtttctctcaat |
16136362 |
T |
|
| Q |
120 |
caacggcgaacacggtcgtcaccgtcttcaataaaacagatctgatgtctgatgtagtggtgatctgaacggaactccggcgacgagagagagaagaaga |
219 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16136363 |
caacggcgaacacggtcgtcaccatcttcaacaaaacagatatgatgtccgatgtagtggtgatctgaacggaactccggcgacgagagagagaagaaga |
16136462 |
T |
|
| Q |
220 |
tttttcgtcgccgcgttcagatttgaacggcttgatggtgaggacggtgttggttaccactgatgaaggccgacgatcattgtgaggatgcaggctgcgg |
319 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16136463 |
ttcgtcgtcgccgcgttcagatttgaacggcttgatggtgaggacggtgttggttaccactgatgaaggccgacaatcattgtgaggatgcaggctgcgg |
16136562 |
T |
|
| Q |
320 |
tgggcgaggacggcggtggttatgagaatggtgctgtcgtgaggaaaagatagaatgcagggaagatgggagtatgaagaagatgggtctgtggaaattt |
419 |
Q |
| |
|
||| | |||||||||||||||| |||||||||| |||||||||| | ||| |||||||||||||||||| |||| ||||||||||||||||||| |||| |
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|
| T |
16136563 |
tggtc-aggacggcggtggttaggagaatggtgttgtcgtgagg-acagagagaatgcagggaagatggaagtaggaagaagatgggtctgtggggattt |
16136660 |
T |
|
| Q |
420 |
gacaaaactgcccctgcttaatggtggaaata |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16136661 |
gacaaaactgcccctgcttaatggtggaaata |
16136692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 451
Target Start/End: Complemental strand, 22616780 - 22616361
Alignment:
| Q |
20 |
tgaacgccgccgcaacctccacctctctcatgtgctatatgtgtttgttttgtccctcgagttctcaccgctctctctctccctcgaggtttctcacaat |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22616780 |
tgaacgccgccgcaacctccacctttctcatgtgctatatgtgtttgttttgtccctcgagttctcactgctctctctctccctcgaggtttctcacaat |
22616681 |
T |
|
| Q |
120 |
caacggcgaacacggtcgtcaccgtcttcaataaaacagatctgatgtctgatgtagtggtgatctgaacggaactccggcgacgagagagagaagaaga |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22616680 |
caacggcgaacacggtcgtcaccgtcttcaacaaaacagatttgatgtctgatgtagtggtgatctgaacggaactccgacgacgagagagagaagaaga |
22616581 |
T |
|
| Q |
220 |
tttttcgtcgccgcgttcagatttgaacggcttgatggtgaggacggtgttggttaccactgatgaaggccgacgatcattgtgaggatgcaggctgcgg |
319 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| | | |
|
|
| T |
22616580 |
tttgtcgtcgccgcgttcagatttgaacggcttgatggtgaggacggtgttggttgccactgatgaaggccgacg---acggtgagga---------cag |
22616493 |
T |
|
| Q |
320 |
tgggcgaggacggcggtggttatgagaatggtgctgtcgtgaggaaaagatagaatgcagggaagatgggagtatgaagaagatgggtctgtggaaattt |
419 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
22616492 |
tgggcgaggacggcggtggttaggagaatggtgctgtcgtgaggaactgagagaatgcagggaagatgggagtatgaagaagatgggtctatggggattt |
22616393 |
T |
|
| Q |
420 |
gacaaaactgcccctgcttaatggtggaaata |
451 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |
|
|
| T |
22616392 |
gacaaaactacccctgcttaatggtggaaata |
22616361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 32 - 322
Target Start/End: Complemental strand, 38364634 - 38364363
Alignment:
| Q |
32 |
caacctccacctctctcatgtgctatatgtgtttgttttgtccctcgagttctcaccgctctctctctccctcgaggtttctcacaatcaacggcgaaca |
131 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || || |
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|
| T |
38364634 |
caacctccacctatctcatgtgctatctgtgtgtgttttgtccctcgagttctcactg--ctctctctccctcgaggtttctcacaatcaacggtgacca |
38364537 |
T |
|
| Q |
132 |
cggtcgtcaccgtcttcaataaaacagatctgatgtctgatgtagtggtgatctgaacggaactccggcgacgagagagagaagaagatttttcgtcgcc |
231 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| |||||||||||||||| ||||||||||||| || ||||||| || |||||| | |
|
|
| T |
38364536 |
cggtcgtc---------------acagatttgatgtccgatgtggtggtgatctgaacgggactccggcgacgacagggagaaga--tttcgtcgtcgtc |
38364454 |
T |
|
| Q |
232 |
gcgttcagatttgaacggcttgatggt---gaggacggtgttggttaccactgatgaaggccgacgatcattgtgaggatgcaggctgcggtgg |
322 |
Q |
| |
|
|||| ||||| ||||||| |||||||| |||||||||| ||||| ||||||||| ||| | | || ||||||||||||||||||||||||| |
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|
| T |
38364453 |
gcgtccagatctgaacggtttgatggtggcgaggacggtggtggttgccactgatg-aggacaa--atgattgtgaggatgcaggctgcggtgg |
38364363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 31 - 451
Target Start/End: Original strand, 41970271 - 41970692
Alignment:
| Q |
31 |
gcaacctccacctctctcatgtgctatatgtgtttgttttgtccctcgagttctcaccgctctctctctccctcgaggtttctcacaatcaacggcgaac |
130 |
Q |
| |
|
||||||||||||| |||||||| |||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || | |
|
|
| T |
41970271 |
gcaacctccacctatctcatgtactatctgtgtgtgttttgtccctcgagttctcactg--ctctctctccctcgaggtttctcacaatcaacggtgacc |
41970368 |
T |
|
| Q |
131 |
acggtcgtcaccgtcttcaataaaacagatctgatgtctgatgtagtggtgatctgaacggaactccggcgacgagagagagaagaagatttttcgtcgc |
230 |
Q |
| |
|
||||||||| |||| | ||||||| | ||| |||||||||||||||| |||||||||||||||| ||||||| || |||||| |
|
|
| T |
41970369 |
acggtcgtc---------------acaggtttgatgtccggtgtggtggtgatctgaacgggactccggcgacgagagggagaaga--tttcgtcgtcgt |
41970451 |
T |
|
| Q |
231 |
cgcgttcagatttgaacggcttgatggt---gaggacggtgttggttaccactgatgaaggccgacgatcattgtgaggatgcaggctgcggt------- |
320 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||||||| | ||| ||||| ||| ||| | | || ||||||||||||||||||||||| |
|
|
| T |
41970452 |
cgcgtccagatctgaacggcttgatggtggcgaggacggtggtagttgccactaatg-aggacaa--atgattgtgaggatgcaggctgcggtggtgagg |
41970548 |
T |
|
| Q |
321 |
--------gggcgaggacggcggtggttatgagaatggtgctgtc----gtgaggaa--aagatagaatgcagggaagatgggagtatgaagaagatggg |
406 |
Q |
| |
|
||| ||||| |||||||||| ||||||||||||||| |||||||| ||| ||||||||| |||||||||| | |||||||||||| |
|
|
| T |
41970549 |
acgacggcgggagaggaaggcggtggtttggagaatggtgctgtctgtggtgaggaactgagagagaatgcagagaagatgggattgggaagaagatggg |
41970648 |
T |
|
| Q |
407 |
tctgtggaaatttgacaaaactgcccctgcttaatggtggaaata |
451 |
Q |
| |
|
||| ||| ||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
41970649 |
tctatgg-gatttgacaaaactacccctacttaatggtggaaata |
41970692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 38364269 - 38364214
Alignment:
| Q |
395 |
gaagaagatgggtctgtggaaatttgacaaaactgcccctgcttaatggtggaaata |
451 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
38364269 |
gaagaagatgggtctatggga-tttgacaaaactacccctgcttaatggtggaaata |
38364214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 451
Target Start/End: Complemental strand, 29483769 - 29483337
Alignment:
| Q |
20 |
tgaacgccgccgcaacctccacctctctcatgtgctatatgtgtttgttttgtccctcgagttctcaccgctctctctctccctcgaggtttctcacaat |
119 |
Q |
| |
|
|||||| || |||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
29483769 |
tgaacgtcgtcgcaacctccacctatctcatgtgctatctttgtgtgttttgtccctcgagttctcactg--ctctctctccctcgaggtttctcacaat |
29483672 |
T |
|
| Q |
120 |
caacggcgaacacggtcgtcaccgtcttcaataaaacagatctgatgtctgatgtagtggtgatctgaacggaactccggcgacgagagagagaagaaga |
219 |
Q |
| |
|
|||||| || |||||||||| |||||| ||||||| ||||| |||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
29483671 |
caacggtgaccacggtcgtc---------------acagatttgatgtccgatgtggtggtgatctgaacgggactccggcgacgagagggagaaga--t |
29483589 |
T |
|
| Q |
220 |
tttttcgtcgccgcgttcagatttgaacggcttgatggt---gaggacggtgttggttaccactgatgaaggccgacgatcattgtgaggatgcaggctg |
316 |
Q |
| |
|
|| |||||| ||| | ||||| ||||||| |||||||| |||||||||| ||||| ||||||||| ||| | | || ||||||||||||||||||| |
|
|
| T |
29483588 |
ttcgtcgtcgtcgcatccagatctgaacgggttgatggtggcgaggacggtggtggttgccactgatg-aggacaa--atgattgtgaggatgcaggctg |
29483492 |
T |
|
| Q |
317 |
cggt---------------gggcgaggacggcggtggttatgagaatggtgctgtc----gtgaggaa--aagatagaatgcagggaagatgggagtatg |
395 |
Q |
| |
|
|||| ||| ||||| |||||||||| ||||||||||||||| |||||||| ||| |||||| || ||||||| || | | |
|
|
| T |
29483491 |
cggtggtgaggacgacggcgggagaggaaggcggtggtttggagaatggtgctgtctgtggtgaggaactgagagagaatgtagagaagatgtgattggg |
29483392 |
T |
|
| Q |
396 |
aagaagatgggtctgtggaaatttgacaaaactgcccctgcttaatggtggaaata |
451 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29483391 |
aagaagatgggtctatgg-gatttgacaaaactacccctgcttaatggtggaaata |
29483337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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