View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5578-Insertion-1 (Length: 300)
Name: NF5578-Insertion-1
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 4720997 - 4721249
Alignment:
| Q |
8 |
aatatcccaatgaagacaaggcacatattcttcaaagaaaagcaccacgaaggtgcacgggaagccctgtgcgtattgcagtgctggagcgcgtcaggac |
107 |
Q |
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| T |
4720997 |
aatatcccaatgaagacaaggcacatattcttcaaagaaaagcaccacgaaggtgcacgggaagccctgtgcgtattgcagtgctggagcgcgtcaggat |
4721096 |
T |
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| Q |
108 |
taatcctagccatcggaatcatctctaaccgctttcaaaacctagaggcagttatcaacatatccccaactatataagtgtgactcagcatcatgatcaa |
207 |
Q |
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| T |
4721097 |
taatcctagccgtcagaatcatctctagcggctttcaaaacctagaggcagttatcaacata--ctcgactatataagtgtgactcaacatcatgatcaa |
4721194 |
T |
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| Q |
208 |
ggtacaatctcattcacccatattttgcacacaatccacctctcgcacatccaga |
262 |
Q |
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| T |
4721195 |
agtacaatctcattcacccattttttgcacacaatccacctctcgcacatacaga |
4721249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 10597480 - 10597406
Alignment:
| Q |
177 |
ctatataagtgtgactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatccacctctc |
251 |
Q |
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| T |
10597480 |
ctatataagcgtgactcagcgtcacgctcaaggtacactttcattcacccaaatttcgcacacaatccacctctc |
10597406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 5678005 - 5678075
Alignment:
| Q |
177 |
ctatataagtgtgactcagcatcatgatcaaggtacaatctcattcaccca-tattttgcacacaatccac |
246 |
Q |
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| T |
5678005 |
ctatataaccgtgactcagcgtcacagtcaaggtacaatctcattcaccaatttttttgcacacaatccac |
5678075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 5703057 - 5703127
Alignment:
| Q |
177 |
ctatataagtgtgactcagcatcatgatcaaggtacaatctcattcaccca-tattttgcacacaatccac |
246 |
Q |
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| T |
5703057 |
ctatataaccgtgactcagcgtcacagtcaaggtacaatctcattcaccaatttttttgcacacaatccac |
5703127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 21923758 - 21923685
Alignment:
| Q |
176 |
actatataagtgtgactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatccacctct |
250 |
Q |
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| T |
21923758 |
actatataagcgtgactcagctttacgccgaaggtacaatctgattcacccat-ttttgcaaacaatccacctct |
21923685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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