View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5578-Insertion-3 (Length: 1140)
Name: NF5578-Insertion-3
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578-Insertion-3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 711; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 213 - 1104
Target Start/End: Complemental strand, 23990327 - 23989419
Alignment:
| Q |
213 |
tatacccaatttggtaagaatacaatcccctcatcagcagtgaattccaagactcca--gtgagtagttctttcagcagaagtatttctcagttcaaata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23990327 |
tatacccaatttggtaagaatacaatcccctcatcagcagtgaattccaagactccacagtgagtagttctttcagcagaagtatttctcagttcaaata |
23990228 |
T |
|
| Q |
311 |
acattggttattctatgttcaaacgtgctgaaatattttaacaataa---tactaatttagcatgggaggaaaaaataa---tcaaattattgaaaccta |
404 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| || |||||||||||||||||| |
|
|
| T |
23990227 |
acattggatattctatgttcaaacgtgctgaaatattttaacaataagagtactaatttagtatttgaggaaaaaaaaaaaatcaaattattgaaaccta |
23990128 |
T |
|
| Q |
405 |
aatgacaaatataaacttaccaaggcgatctagagctgaagagggcatgataactgaaaggaaaaataatttgtattagctatcaaaaagaatttcacaa |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
23990127 |
aatgacaaatataaacttaccaaggcgatctagagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctgtcaaaaagaatttcacaa |
23990028 |
T |
|
| Q |
505 |
tgtttgataccaaataatacaatgtaactatgtaaggttttagtgcacttacttttatcaccgttttccagagttggctgcaaaagaaaaatcataagta |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23990027 |
tgtttgataccaaataatacaatgtaactatgtaaggtgttagtgcacttacttttatcaccgttttccagagttggctgcaaaagaaaaatcagaagta |
23989928 |
T |
|
| Q |
605 |
-gaatcagtattgaattttgaggttttaaataggcatatactttagattgaacatgtgtgtggtgtacaccaatcaacacggacacatattgttacattg |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23989927 |
agaatcagtattgaattttgaggttttaaataggcatatactttagattgaacatgtgtgtggtgtacaccaatcaacacggacacatattgttacattg |
23989828 |
T |
|
| Q |
704 |
aatcactttcactttaataaattatttattattagtatctatttgtcaatatcagtgtcatgtttggtgtatgtgtcggttattcataaatttggaagta |
803 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23989827 |
aatcactttcattttaataaattatttattattagtatctatttgtcaatatcagtgtcatgtttggtgtatgtgtcggtaattcataaatttggaagta |
23989728 |
T |
|
| Q |
804 |
aatagtaaatagaaaaagagctgtttacccaatttgtgtgcatataaagagctgccaaagatgtaacaataatgcaatttgtttgttttcttagcaagtt |
903 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23989727 |
actagtaaatagaaaaagagctgtttacccaatttgtgtgcatataaagagctgccaaagatgtaacaataatgcaatttgtttgttttcttagcaagtt |
23989628 |
T |
|
| Q |
904 |
gtgattgattgtcggtgtaaaacaattttagaacatgcatatgaattaaattgggttagaaaagttagatatacatcatgtgacata-ccttttaagaga |
1002 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23989627 |
gtgattgattgtcggtgtaaaacaattttagaacatgcatatgaattaaattgggttagagaagttagatatacatcatgtgacatacccttttaagaga |
23989528 |
T |
|
| Q |
1003 |
tgagacc-ggaaac-actgt-aacatgttcaaagatctca-tgtgcagttcgtcataagaatactca-tgtattcatcaatc--accgtgatgatcctca |
1095 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||||| |||||||| ||| | ||||||| |||| |||||| || ||||||||||||||| |
|
|
| T |
23989527 |
tgagaccgggaaacaactgtaaacatgttcaaagatctcattgtgcagtccgttccatagatactcattgtaatcatcattccacccgtgatgatcctca |
23989428 |
T |
|
| Q |
1096 |
tacaaattc |
1104 |
Q |
| |
|
||||||||| |
|
|
| T |
23989427 |
tacaaattc |
23989419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 213 - 662
Target Start/End: Complemental strand, 23983633 - 23983177
Alignment:
| Q |
213 |
tatacccaatttggtaagaatacaatcccctcatcagcagtgaattccaagactcca--gtgagtagttctttcagcagaagtatttctcagttcaaata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23983633 |
tatacccaatttggtaagaatacaatcccctcatcagcagtgaattccaagactccacagtgagtagttctttcagcagaagtatttctcagttcaaata |
23983534 |
T |
|
| Q |
311 |
acattggttattctatgttcaaacgtgctgaaatattttaacaataatactaatttagcatgggaggaaaaaataatcaaattattgaaacctaaatgac |
410 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23983533 |
acattggatattctatgttcaaacgtgctgaaagagtttaacaataatactaatttagcatgggaggaaaaaataatcaaattattgaaacctaaatgac |
23983434 |
T |
|
| Q |
411 |
aaatataaacttaccaaggcgatctagagctgaagagggcatgataactgaaaggaaaaataatttgtattagctatcaaaaagaatttcacaatgtttg |
510 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23983433 |
aaatataaacttaccaaggctatctagagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtttg |
23983334 |
T |
|
| Q |
511 |
ataccaaataatacaatgtaactatgtaaggttttagtgcacttacttttatcaccgttttccagagttggctgca--aaagaaaaatcataagt-agaa |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| || | |
|
|
| T |
23983333 |
ataccaaataatacaatgtaactatgtaaggtgttagtgcgcttacttttatcaccgttttccagagttggctgcaagaaagaaaaatcagaagtaagta |
23983234 |
T |
|
| Q |
608 |
tc--agtattgaattttgaggttttaaataggcatatactttagattgaacatgtgt |
662 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |
|
|
| T |
23983233 |
tcagagtattgaattttgaggtttgaaataggcatacactttagattgaaaatgtgt |
23983177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 213 - 775
Target Start/End: Complemental strand, 23966585 - 23966003
Alignment:
| Q |
213 |
tatacccaatttggtaagaatacaatcccctcatcagcagtgaattccaagactcca--gtgagtagttctttcagcagaagtatttctcagttcaaata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23966585 |
tatacccaatttggtaagaatacaatcccctcatcagcagtgaattccaagactccacagtgagtagttctttcagcagaagtatttctcagttcaaata |
23966486 |
T |
|
| Q |
311 |
acattggttattctatgttcaaacgtgctgaaatattttaacaataa---tactaatttagcatgggaggaaaaaataatcaaattattgaaacctaaat |
407 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||| | |
|
|
| T |
23966485 |
acattggatattctatgttcaaacgtgctgaaatattttaacaataagagtactaatttagtatttgaggaaaaaa-aatcaaattattgaaacctaact |
23966387 |
T |
|
| Q |
408 |
gacaaatataaacttaccaaggcgatctagagctgaagagggcatgataactgaaaggaaaaataatttgtattagctatcaaaaagaatttcacaatgt |
507 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
23966386 |
gacagatataagcttaccaaggcgatctagagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctatcaa----aatttcacaatgt |
23966291 |
T |
|
| Q |
508 |
ttgataccaaataatacaatgt-aactatgtaaggttttagtgcacttacttttatcaccgttttccagagttggctgcaaa--agaaaaatcataagt- |
603 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
23966290 |
ttgataccaaataatacaatgtaaactatgtaaggtgttagtgcacttacttttatcaccattttccagaattggctgcaaaatagaaaaatcagaagta |
23966191 |
T |
|
| Q |
604 |
agaatcagtattgaattttgaggttttaaataggca--tatactttagattgaacatgtgtgtggtgtac-------------accaatcaacacggaca |
688 |
Q |
| |
|
||||| |||||||| |||||||||| ||||| ||| || || |||||||||| |||||| |||||||| || ||| ||| |||| |
|
|
| T |
23966190 |
agaattggtattgaaatttgaggtttaaaata-gcatctacacattagattgaagatgtgtatggtgtacgactatgtttgtgactgatcgacatagaca |
23966092 |
T |
|
| Q |
689 |
catattgttacattgaatcactttcactttaataaatta-tttattattagtatctatttgtcaatatcagt-gtcatgtttggtgtat |
775 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| |||||||||| ||||||| |||| ||| |||| |||| |||||||||| |
|
|
| T |
23966091 |
catattgttacattgaatcactttcattttcgtaaattattttattattattatctatctgtcgataacagtcatcatatttggtgtat |
23966003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 852 - 1007
Target Start/End: Complemental strand, 23982997 - 23982841
Alignment:
| Q |
852 |
gagctgccaaagatgtaacaataatgcaatttgtttgttttcttagcaagttgtgattgattgtcggtgtaaaacaattttagaacatgcatatgaatta |
951 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
23982997 |
gagctgccatagatgtaacaataatgcaatttgtttgttttcttagcaagttgtgattgattgtcggtgtaaaaccattttaaaacacgcatatgaatta |
23982898 |
T |
|
| Q |
952 |
aattgggttagaaaagttagatatacatcatgtgacata-ccttttaagagatgaga |
1007 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
23982897 |
aattgggttagagaagttagatatacatcatgtgacatacccttttaagagacgaga |
23982841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 23983842 - 23983729
Alignment:
| Q |
7 |
agtctttgctgtgaggctgcaacttcacaaactttcctttaacaagacttgtgcttttcagagacacaatgtttccttcctgtaggaacaaatcttccat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23983842 |
agtctttgctgtgaggctgcaacttcacaaactttcctttaacaagacttgtgcttttcagagacacaatgtttccttcctgtaggaacaaatcttccat |
23983743 |
T |
|
| Q |
107 |
catctgacaattac |
120 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23983742 |
catctgacaattac |
23983729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 23990537 - 23990424
Alignment:
| Q |
7 |
agtctttgctgtgaggctgcaacttcacaaactttcctttaacaagacttgtgcttttcagagacacaatgtttccttcctgtaggaacaaatcttccat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
23990537 |
agtctttgctgtgaggctgcaacttcacacactttcctttaacaagacttgtgcttttcagagacacaatgtttccttcctgaaggagcaaatcttccat |
23990438 |
T |
|
| Q |
107 |
catctgacaattac |
120 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23990437 |
catctgacaattac |
23990424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 23966852 - 23966741
Alignment:
| Q |
9 |
tctttgctgtgaggctgcaacttcacaaactttcctttaacaagacttgtgcttttcagagacacaatgtttccttcctgtaggaacaaatcttccatca |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| || |||||||||||||| || ||||||||||| |
|
|
| T |
23966852 |
tctttgctgtgaggctggaacttcacaaactttcctttttcaagacttgtgcttttcagagagacaaggtctccttcctgtaggagcatatcttccatca |
23966753 |
T |
|
| Q |
109 |
tctgacaattac |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23966752 |
tctgacaattac |
23966741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 856 - 1040
Target Start/End: Complemental strand, 23965688 - 23965498
Alignment:
| Q |
856 |
tgccaaagatgtaa--caataatgcaatttgtttgttttcttagcaagttgtgattgattgtcggtgtaaaacaattttagaacatgcatatgaattaaa |
953 |
Q |
| |
|
|||||||||||||| | ||| | ||||||||| |||||||| | ||| |||||||||||||| ||||||||||||||| | | |||| |||| ||| |
|
|
| T |
23965688 |
tgccaaagatgtaattctatattacaatttgttagttttcttggtgagtagtgattgattgtcgttgtaaaacaattttaaactgtacataagaatgaaa |
23965589 |
T |
|
| Q |
954 |
ttgggttagaaaagttagatatacatcatgtgacata-ccttttaagagatgagaccg-gaaac-actgt-aacatgttcaaagatctcat |
1040 |
Q |
| |
|
|||||||||| ||||||||||| ||| | |||||||| ||| || ||||||||||| | ||||| ||||| |||||||||||||||||||| |
|
|
| T |
23965588 |
ttgggttagagaagttagatatgcataaggtgacataccctattcagagatgagacagagaaacaactgtaaacatgttcaaagatctcat |
23965498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 807 - 853
Target Start/End: Complemental strand, 23983104 - 23983058
Alignment:
| Q |
807 |
agtaaatagaaaaagagctgtttacccaatttgtgtgcatataaaga |
853 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
23983104 |
agtaaatagaaaaagagttgtctacccaatttgtgtgcacataaaga |
23983058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 882 - 933
Target Start/End: Original strand, 42351330 - 42351381
Alignment:
| Q |
882 |
ttgtttgttttcttagcaagttgtgattgattgtcggtgtaaaacaatttta |
933 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
42351330 |
ttgtttgttgtcttagcaagttatgattgattgtcggtttaaaacaatttta |
42351381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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