View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5578-Insertion-4 (Length: 872)
Name: NF5578-Insertion-4
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578-Insertion-4 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 726; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 8 - 872
Target Start/End: Complemental strand, 34720372 - 34719515
Alignment:
| Q |
8 |
gtaccaagtttagattgttacatttatcatgttaccataatctatttattttggttttattgattgctaatacgatggaattattgcaaggggtaatgga |
107 |
Q |
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| T |
34720372 |
gtaccaagtttagattgttacatttatcatgttaccataatctatttattttggctttattgattgctaatacgatggaattattgcaaggggtaattga |
34720273 |
T |
|
| Q |
108 |
ttagagtaatatggaattgaagtatgtaataatatcccttgcacagtattattcatttggtagaataccttttgcaggtgtagaagatttcattagcttc |
207 |
Q |
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| T |
34720272 |
ttagagtaatatggaattgaagtatgtaataatatcccttgcacagtattattcatttggtagaataccttttgcaggtgtagaagatttcattagcttc |
34720173 |
T |
|
| Q |
208 |
tctgatacagatgctacggaagattttacttgtgcttcctctcttctgtcaaccagtccgtgggattcatatgcaaccaaatccgtttctctagtacatt |
307 |
Q |
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| T |
34720172 |
tctgatacagatgctacggaagattttacttgtgcttcctctcttctgtcaaccagtccgtgggattcatatgcaaccaaatccgtttctctagtacatt |
34720073 |
T |
|
| Q |
308 |
ctgatcgtacaaccagtactgctcaagccataacacaca--acgaatcagcatattcctctaacctcattagaatattggcacagtgatcttgatcaaca |
405 |
Q |
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| T |
34720072 |
ctgatcgtacaaccagtactgctcaagccataacacacacaacgagtcagcgtattcctctaacctcatcagaatattggcacggtgatcttgatcaaca |
34719973 |
T |
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| Q |
406 |
tgtcgattccagcatgtggatctcaaactta-gactgtgaagatagcgaccgctttcaagaatttcaatgttcttagaaccttgagtcgtgttttcactg |
504 |
Q |
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| T |
34719972 |
tgtcgattccagcatgtggatctcaaactcaagactgtgaagatagcaaccgctttcaagaatttcaatgttcttagaaccttgagtcgtgttttcacta |
34719873 |
T |
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| Q |
505 |
gttggactaacaggattgttctcaccccaaatagtttaaatctaacaaatttacaggcaaggtagattccatctcatgatttctgatttgtaggacctaa |
604 |
Q |
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| T |
34719872 |
gttggactaacatgattgttctcaccccaaatagtttaaatctaacaaatttacaggcaaggtagattccatctcatgatttctgatttgtaggacctaa |
34719773 |
T |
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| Q |
605 |
attttcgttctaatgactatgtttactatctctctcttctcgtgttatattcatgatagaagttttaataacaatatcatttctgttttcaaacattgta |
704 |
Q |
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| T |
34719772 |
attttcgttgtaatgactatgtttactatctgtctcttctcgtgttatattcatgatagaagttttaataacaatatcatttctgttttcaaacattgta |
34719673 |
T |
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| Q |
705 |
atgttcagtaaaaacggttttttgttggtttctattcaaagtttagtaaacaggacttaaaataaaaatgagatgatatttttataaactgaaannnnnn |
804 |
Q |
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| T |
34719672 |
atgttcagtaaaaacggttttttgttggtttctattcaaagtttagtaaacaggacttaaaataaaaatgagatgatgtttttataaactgaaa------ |
34719579 |
T |
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| Q |
805 |
nnnnnnnnnnnnnnnntcctgaaatcaaaatgacccttatcaattcaattctagctgtaccttagttc |
872 |
Q |
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| T |
34719578 |
----atatatatatattcctgaaatcaaaatgacccttatcaattcaattctagctgtaccttagttc |
34719515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 34725618 - 34725483
Alignment:
| Q |
179 |
ttgcaggtgtagaagatttcattagcttctctgatacagatgctacggaagattttacttgtgcttcctctcttctgtcaaccagtccgtgggattcata |
278 |
Q |
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| T |
34725618 |
ttgcaggtgtagaagatttcatgaacttttctgatacaaatgctacacaagactttacttgtgctctctctcttctgtcaaccaatcagtgggattcata |
34725519 |
T |
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| Q |
279 |
tgcaaccaaatccgtttctctagtacattctgatcg |
314 |
Q |
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| T |
34725518 |
tgcgactaaatccatttctcaagaacattctaatcg |
34725483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 495 - 636
Target Start/End: Complemental strand, 34729392 - 34729251
Alignment:
| Q |
495 |
gttttcactggttggactaacaggattgttctcaccccaaatagtttaaatctaacaaatttacaggcaaggtagattccatctcatgatttctgatttg |
594 |
Q |
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| T |
34729392 |
gttttcactatttggattaatatgaatgttcttactctaaatagtttcaacctaataaatttataggcaagctagattccatctcatgatttcttattta |
34729293 |
T |
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| Q |
595 |
taggacctaaattttcgttctaatgactatgtttactatctc |
636 |
Q |
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| T |
34729292 |
taggacctaaatttttgttgtaatgactatgtttattatctc |
34729251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 178 - 335
Target Start/End: Complemental strand, 34729676 - 34729519
Alignment:
| Q |
178 |
tttgcaggtgtagaagatttcattagcttctctgatacagatgctacggaagattttacttgtgcttcctctcttctgtcaaccagtccgtgggattcat |
277 |
Q |
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||||||||||||||||||||||||| | | ||||||||| ||| | |||| |||| ||||||| ||||||||||||||||| ||| |||||||||| |
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| T |
34729676 |
tttgcaggtgtagaagatttcattaccgtttctgatacaaatgatgaacaagactttatttgtgctctctctcttctgtcaaccaatccatgggattcat |
34729577 |
T |
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| Q |
278 |
atgcaaccaaatccgtttctctagtacattctgatcgtacaaccagtactgctcaagc |
335 |
Q |
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| T |
34729576 |
atgcgactaaatccatgtctctagaacattctaatcgtccaaccagtgctgttcaagc |
34729519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 550 - 623
Target Start/End: Complemental strand, 34725272 - 34725200
Alignment:
| Q |
550 |
caaatttacaggcaaggtagattccatctcatgatttctgatttgtaggacctaaattttcgttctaatgacta |
623 |
Q |
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| T |
34725272 |
caaacttacaggcaacgaagattc-atctcacgatttcttatttgtaggacctaaattttcgttgtaataacta |
34725200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 231 - 309
Target Start/End: Complemental strand, 38610217 - 38610139
Alignment:
| Q |
231 |
ttttacttgtgcttcctctcttctgtcaaccagtccgtgggattcatatgcaaccaaatccgtttctctagtacattct |
309 |
Q |
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| T |
38610217 |
ttttacttgtgctctttcacttctgtcaatcaatccgtgggattcatatgcgattaaatccatgtctctagaacattct |
38610139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 231 - 309
Target Start/End: Complemental strand, 38795001 - 38794923
Alignment:
| Q |
231 |
ttttacttgtgcttcctctcttctgtcaaccagtccgtgggattcatatgcaaccaaatccgtttctctagtacattct |
309 |
Q |
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||||||||||||| || |||||||||| || |||||||||||||||||| | |||||| | ||||||| ||||||| |
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| T |
38795001 |
ttttacttgtgctctttcacttctgtcaatcaatccgtgggattcatatgcgattaaatccatgtctctagaacattct |
38794923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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