View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5578-Insertion-5 (Length: 501)
Name: NF5578-Insertion-5
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Original strand, 36399968 - 36400458
Alignment:
| Q |
8 |
ccaacctttgtagagaaagcaatagtggtcaccagtatcaggctaaagatgattttcggcttcagaatgaatcaacgtctcgagagatgaatatgtgtaa |
107 |
Q |
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| T |
36399968 |
ccaacctttgtagagaaagcaatagtggtcaccagtatcaggctaaagatgattttcggcttcagaatgaatcaacgtctcgagagatgaatatgtgtaa |
36400067 |
T |
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| Q |
108 |
gttttccacactgggagtagtttttcagtcactcattataattaatatatctataaaattcttggtctagtaagaacttgacaagaaaaagataattgac |
207 |
Q |
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| T |
36400068 |
gttttccacactgggagtagtttttcagtcactcattataattaatatatctataaaattcttggtctagtaagaacttgacaagaaaaagataattgac |
36400167 |
T |
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| Q |
208 |
attagaataataatagacatatttaaaagtacatagagattcgtgagtttagccaaactagatattgtcatttgtaatcacatgcttaagacactcctct |
307 |
Q |
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| T |
36400168 |
attagaataataatagacatatttaaaaggacatagagattcgtgagtttagccaaactagatattggcatttgtaatcacatgcttaagacactcctcc |
36400267 |
T |
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| Q |
308 |
tgatcacatgtttaagttaaccaagttgtttatcacttggaccaccccattttagttgacatgtgactaatttagttcgcccttataagtaatggaataa |
407 |
Q |
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| T |
36400268 |
tgatcacatgtttaagttaaccaagttgtttatcacttggaccaccccattttagttgacatgtgactaatttagttcgcccttataagtaatggaataa |
36400367 |
T |
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| Q |
408 |
agacatgaaataacatctccaatgaagagacaaacctcatttggagtttaattaaggaggaacacatccaacaaaactcagattaaaatctata |
501 |
Q |
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| T |
36400368 |
agacatgaaataacatctccaatgaagagacaaacctcatttggagtttaatt---gaggaacacatccaacaaaactcagattaaaatctata |
36400458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 36393764 - 36393953
Alignment:
| Q |
79 |
tcaacgtctcgagagatgaatatgtgtaagttt-tccacactgggagtagtttttcagtcactcattat---aattaatatatctat--aaaattcttgg |
172 |
Q |
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|||| |||||||||||||||||||||||| | |||||| |||||||| ||||| |||||||| |||| |||||||||||||| ||||| || || |
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| T |
36393764 |
tcaatgtctcgagagatgaatatgtgtaacagtgtccacattgggagtaattttttagtcactccttattgcaattaatatatctaacaaaaatcctagg |
36393863 |
T |
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| Q |
173 |
tctagtaagaacttgacaagaaaaagataattgacattagaataataatagacatatttaaaagtacatagagattcgtgagtttagcca |
262 |
Q |
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| T |
36393864 |
tcttataaaaacttgacaagaaaaagataattgacattagaataatactagtcatattttaaagttcatacagattcgtgagttgagcca |
36393953 |
T |
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