View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5578-Insertion-6 (Length: 447)
Name: NF5578-Insertion-6
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578-Insertion-6 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 447
Target Start/End: Original strand, 1440579 - 1441030
Alignment:
| Q |
8 |
gtgtgcgtgtgcgcgggcgcgcacaagaatgcaagtaaacgagtgcttgatttcagcagaatttctctttctttggtctgctactcctggtagtaagatt |
107 |
Q |
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| T |
1440579 |
gtgtgcgtgtgggtgggcgcgcaaaagaatgcaagtaaacgagtgcttggtttcagcagaatttctctttctttggtctgctactcccggtagtaagatt |
1440678 |
T |
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| Q |
108 |
ctatttggattttctgtcataacttacacaggc------------aacggtgctctattacaaagacagcaaaggaatcatctattgagtaatccctttg |
195 |
Q |
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| T |
1440679 |
ctatttggattttctgtcgtaccttaaacaggctgctccaaaaggaacggtgctctattacaaagacagcaaaggaatcatctattgagtaatccctctg |
1440778 |
T |
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| Q |
196 |
tgtcaacactcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaacatgatgcgaggggaacaattgaagggtaac |
295 |
Q |
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| T |
1440779 |
tgtcaacactcaacacgacctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaacatgatgcgaggggaacaattgaagggtaac |
1440878 |
T |
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| Q |
296 |
actctattagatgatggtatgtttaaagatagcgattggtttaaccaaatataattgactaccagcatgtcttgtgtgacatatggattgaggacttgat |
395 |
Q |
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| T |
1440879 |
actctattagatgatcgtatgtttaaagacagtgattggtttaaccaaatataattgactaccagcatgtcttgtgtgacatatggattgaggacttgat |
1440978 |
T |
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| Q |
396 |
tctaagtacaacataggaactacaattgagagcatggatcgccacaatttgg |
447 |
Q |
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| T |
1440979 |
tctaagtacaacgtaggaactacaattgagagcatggatcgccacaatttgg |
1441030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 1453161 - 1453268
Alignment:
| Q |
205 |
tcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaa--catgatgcgaggggaacaattgaagggtaacactctat |
302 |
Q |
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| T |
1453161 |
tcaacatgacctgaattttaacaatgacaaatacaagaagaagtgcagttaaaaggagaaacaaagatgtgaggggaacaattgaggagcaacacttttt |
1453260 |
T |
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| Q |
303 |
tagatgat |
310 |
Q |
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| T |
1453261 |
tagatgat |
1453268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 1464853 - 1464960
Alignment:
| Q |
205 |
tcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaa--catgatgcgaggggaacaattgaagggtaacactctat |
302 |
Q |
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| T |
1464853 |
tcaacatgacctgaattttaacaatgacaaatacaagaagaagtgcagttaaaaggagaaacaaagatgtgaggggaacaattgaggagcaacacttttt |
1464952 |
T |
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| Q |
303 |
tagatgat |
310 |
Q |
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| T |
1464953 |
tagatgat |
1464960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 41704446 - 41704491
Alignment:
| Q |
49 |
agtgcttgatttcagcagaatttctctttctttggtctgctactcc |
94 |
Q |
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| T |
41704446 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctcc |
41704491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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