View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5578-Insertion-7 (Length: 422)
Name: NF5578-Insertion-7
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 4794867 - 4794518
Alignment:
| Q |
8 |
caacagacgctcaagatggtacgtacatcacttaaaaatgccacatttatatctaacgcttttagaattatgtcaaaatttagtgataatccatatgata |
107 |
Q |
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| T |
4794867 |
caacagacgctcaagatggtacgtacatcgcttaaaaatgccacatttatatctaacgcttttagaattatgtcaaactttagtgataatccatatgata |
4794768 |
T |
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| Q |
108 |
caaattttcaatcaaataatcaattttgcaaaatttgcattcaataaaacttatcaagcagtgtaacataatatatttgataactttgcactacattaag |
207 |
Q |
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| T |
4794767 |
caaattttcaatcaaataatcaattttgcaaaatttgcattcaataaaacttatcaagcagtgtaacataatatatttgataactttgcactacattaag |
4794668 |
T |
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| Q |
208 |
ttggagcaatcatggatatcaaaagctcctatgaggtgaataaattgagttggcatggagacccatgtcttcctaagcaatatgcatgggaaggtctagt |
307 |
Q |
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| T |
4794667 |
ttggagcaatcatggatatcaaaagctcctatgaggtgaataaattgagttggcaaggagacccatgtcttcctaagcaatatgcatgggaaggtctagt |
4794568 |
T |
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| Q |
308 |
ttgcaaaggtgataccattccaaggatcacatctttgtgagtacttgtct |
357 |
Q |
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| T |
4794567 |
ttgcaaaggtgataccattccaaggatcacatctttgtgagtacttgtct |
4794518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 181 - 351
Target Start/End: Complemental strand, 4804287 - 4804110
Alignment:
| Q |
181 |
tatttgataactttgcactacatta-------agttggagcaatcatggatatcaaaagctcctatgaggtgaataaattgagttggcatggagacccat |
273 |
Q |
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| T |
4804287 |
tatttgataactttgcactacattattaattaagttggtgcaatcacggatataaaaagctcctatctggtcaataaattgagttggcaaggagaccctt |
4804188 |
T |
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| Q |
274 |
gtcttcctaagcaatatgcatgggaaggtctagtttgcaaaggtgataccattccaaggatcacatctttgtgagtac |
351 |
Q |
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| T |
4804187 |
gtcttcctacggaatatgcatgggaaggtcttgtttgcacaggtgacaccattccaaggatcacatctttgtgagtac |
4804110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 203 - 353
Target Start/End: Complemental strand, 4849327 - 4849177
Alignment:
| Q |
203 |
ttaagttggagcaatcatggatatcaaaagctcctatgaggtgaataaattgagttggcatggagacccatgtcttcctaagcaatatgcatgggaaggt |
302 |
Q |
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| T |
4849327 |
ttaagttggtgcaataatggatatcaaaagctcctatcaagtctataaattgaattggcaaggagacccgtgtcttcctacgcaatatagatgggaaggt |
4849228 |
T |
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| Q |
303 |
ctagtttgcaaaggtgataccattccaaggatcacatctttgtgagtactt |
353 |
Q |
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| T |
4849227 |
cttgtttgtaagggtgacaccattccaaggatcacatctttgtgagtactt |
4849177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 351
Target Start/End: Complemental strand, 4829739 - 4829602
Alignment:
| Q |
214 |
caatcatggatatcaaaagctcctatgaggtgaataaattgagttggcatggagacccatgtcttcctaagcaatatgcatgggaaggtctagtttgcaa |
313 |
Q |
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| T |
4829739 |
caataatggatataaaaagctcctaccagatcaataaattgagttggcaaggagacccttgtcttcctaagatatttacatgggaaggtcttgtttgcaa |
4829640 |
T |
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| Q |
314 |
aggtgataccattccaaggatcacatctttgtgagtac |
351 |
Q |
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| T |
4829639 |
aggtgacaccattccaaggatcacatctttgtgagtac |
4829602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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