View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5578_high_5 (Length: 431)
Name: NF5578_high_5
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578_high_5 |
 | |
|
| [»] chr5 (22 HSPs) |
| |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0692 (1 HSPs) |
| |
|
| [»] chr1 (7 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 22)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 10558761 - 10559174
Alignment:
| Q |
18 |
aatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
10558761 |
aatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcacaagagttttattaccgaatgtaatgcactaaaaa |
10558860 |
T |
|
| Q |
118 |
atattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10558861 |
atattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaa |
10558960 |
T |
|
| Q |
218 |
tggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgct |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10558961 |
tggaagcttagaaaactggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgct |
10559060 |
T |
|
| Q |
318 |
tctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10559061 |
tctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatg |
10559160 |
T |
|
| Q |
418 |
tgagtgattttggc |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10559161 |
tgagtgattttggc |
10559174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 19606215 - 19605802
Alignment:
| Q |
18 |
aatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
19606215 |
aatcttatgtcagaagataaagttattgctgttaaggtcctgaaccttgaaaagaagggagctcacaagagttttattactgaatgtaatgctctcaaaa |
19606116 |
T |
|
| Q |
118 |
atattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaa |
217 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
19606115 |
atattagacatcgaaatttagttaagattttaacttgttgttctagtattgataacaaaggtctagaattcaaagctctagtttttgagtacatgagaaa |
19606016 |
T |
|
| Q |
218 |
tggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgct |
317 |
Q |
| |
|
||||||||||||| ||||||||| | ||| ||||||| ||| || |||||| ||||| | || | |||||| | |||||| || | |||||| || |
|
|
| T |
19606015 |
tggaagcttagaacaatggttgcatcccgggacaatgaatgcagatcatccaagaacattgaagtttgagcaaagattaaatatccttgtcgatgtttct |
19605916 |
T |
|
| Q |
318 |
tctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatg |
417 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||| |||| |
|
|
| T |
19605915 |
tctgcattacattaccttcatcatgaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgacgacgatatcgttgcacatg |
19605816 |
T |
|
| Q |
418 |
tgagtgattttggc |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19605815 |
tgagtgattttggc |
19605802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 67 - 430
Target Start/End: Complemental strand, 10763434 - 10763071
Alignment:
| Q |
67 |
aaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagacatcgaaatctggttaagattttaacttgttgttctagtat |
166 |
Q |
| |
|
|||| |||||||||| ||||||||| ||| |||||||||||||| ||||||||| ||| || ||| | |||||||||||||| ||||||||||||| |
|
|
| T |
10763434 |
aaaacaatggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatattcaacaccggaatttagttaagattttaacatgttgttctagtac |
10763335 |
T |
|
| Q |
167 |
tgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaa |
266 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||| | ||| |||| | |||| | |||| |||| |
|
|
| T |
10763334 |
tgattataaaggtcaagaatttaaagctctggtttttgattacatgaaaaatggaagcttagaacgatggctgcaccctaggaatttaaatgcagagact |
10763235 |
T |
|
| Q |
267 |
ccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcatt |
366 |
Q |
| |
|
|||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10763234 |
ccaacaacattggatcttgatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcatt |
10763135 |
T |
|
| Q |
367 |
gtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttgg |
430 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
10763134 |
gtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttgg |
10763071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 29 - 431
Target Start/End: Original strand, 9824970 - 9825356
Alignment:
| Q |
29 |
agaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagacat |
128 |
Q |
| |
|
|||||||||||||||||| | |||||| || || |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9824970 |
agaagataaagttattgccataaaggtcttgaactttgaaaagaagggagctcacaagagttttattaccgaatgtaatgaactcaaaaatattagacat |
9825069 |
T |
|
| Q |
129 |
cgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaat-ggaagctta |
227 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
9825070 |
cgaaatttggttaagattttaacatgtttttctagtatcgattacaaagggcaagaattcaaagctctagtttttgagtacatgcaaaatgggaagctta |
9825169 |
T |
|
| Q |
228 |
gaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattac |
327 |
Q |
| |
|
||| |||||| || ||||||| |||||||||||| || ||| ||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
9825170 |
gaacaatggttgaatccaaggatagagaatgtagagcatcctagaacattggatcttgatcaaagattgaatatcattattgatgttg------------ |
9825257 |
T |
|
| Q |
328 |
attatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattt |
427 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||| |||||||||| ||| ||||| |||||||||| | |||| |||| | ||||||||| |
|
|
| T |
9825258 |
-----cttcatcgtgattgtgagcaattaatccttcattgtgatataaagccaagtaatatccttgttgatgaagatattgtttctcaggcgagtgattt |
9825352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 27 - 431
Target Start/End: Original strand, 7192873 - 7193277
Alignment:
| Q |
27 |
tcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagac |
126 |
Q |
| |
|
||||||||||||||| |||| ||||||||| || ||||| ||||||| ||||||| ||||||||| ||| | |||||||||||||| ||||||||||||| |
|
|
| T |
7192873 |
tcagaagataaagttgttgccgtgaaggtcatgaaccttcaaaagaagggagctcacaagagtttcattgctgaatgtaatgcactaaaaaatattagac |
7192972 |
T |
|
| Q |
127 |
atcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagctt |
226 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||| |||| |||||||||||||| ||||| |||||| |||| |||||||||||||| || |||||||| |
|
|
| T |
7192973 |
atcgaaatttggttaagattttgacatgttgttccagtacagattacaaaggtcaagaatttaaagctttagtctttgaatacatgaacaacggaagctt |
7193072 |
T |
|
| Q |
227 |
agaaagctggttgcattcaaggatga-tgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcatt |
325 |
Q |
| |
|
|||| ||| | ||| | | ||| | ||||||||||| | | |||| | ||||| ||| |||||||| |||||||| | ||||| |||| | || ||| |
|
|
| T |
7193073 |
agaacaatggctacatccta-gatcagtgaatgtagagaatcaaagaacgttggaccttgatcaaagattgaatatcgctgttgatattgcctttgtatt |
7193171 |
T |
|
| Q |
326 |
acattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgat |
425 |
Q |
| |
|
|||||| ||||||| ||||||||||||| | || |||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||| |
|
|
| T |
7193172 |
acattaccttcatcttgaatgtgagcaatcgatcattcattgtgatctaaagccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgat |
7193271 |
T |
|
| Q |
426 |
tttggc |
431 |
Q |
| |
|
|||||| |
|
|
| T |
7193272 |
tttggc |
7193277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 10564886 - 10565299
Alignment:
| Q |
18 |
aatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaa |
117 |
Q |
| |
|
|||||| ||||||||||||| ||| |||| || ||||||||| |||| ||||||| ||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
10564886 |
aatcttgtgtcagaagataatgttgttgccgtaaaggtcctgaacctccaaaagaagggagctcacaagagtttcattgttgaatgtaatgcactcaaaa |
10564985 |
T |
|
| Q |
118 |
atattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaa |
217 |
Q |
| |
|
||||| |||| |||||| | |||||| ||||||| |||||||| |||| |||||||||||||| ||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
10564986 |
atattcgacaccgaaatttagttaaggttttaacctgttgttcaagtacagattacaaaggtcaagaatttaaagctctggtttttgagtacatgaaaaa |
10565085 |
T |
|
| Q |
218 |
tggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgct |
317 |
Q |
| |
|
|||||||||||| ||||||||| | ||| | |||| ||| | |||| | ||||||| || ||| ||| | | || ||||| ||||||||| |
|
|
| T |
10565086 |
tggaagcttagatcaatggttgcatcctgagattttaaatgcagaacccccaacaacattggactttgctcatagattatacattattatcgatgttgct |
10565185 |
T |
|
| Q |
318 |
tctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatg |
417 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||| || |||| |||||||||| |
|
|
| T |
10565186 |
tctgcattacattatcttcatagagaatgtgaagaattggtcattcattgtgatctaaagccaagcaatatccttcttgacgatgacatggttgctcatg |
10565285 |
T |
|
| Q |
418 |
tgagtgattttggc |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10565286 |
tgagtgattttggc |
10565299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 10604611 - 10605024
Alignment:
| Q |
18 |
aatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaa |
117 |
Q |
| |
|
|||||| ||||||||||||| || ||||||| ||||||||| |||| ||||||| ||||| | ||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
10604611 |
aatcttgtgtcagaagataatgtagttgctgtaaaggtcctgaacctccaaaagaagggagcacacaagaatttcattgttgaatgtaatgcactcaaaa |
10604710 |
T |
|
| Q |
118 |
atattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaa |
217 |
Q |
| |
|
||| ||||| || ||| | ||| | ||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
10604711 |
ctataagacaccggaatttagttcaagttttaacatgttgttctagtacagattacaaaggtcaagaatttaaagctctagtttttgattacatgaaaaa |
10604810 |
T |
|
| Q |
218 |
tggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgct |
317 |
Q |
| |
|
||||||||||||| ||||||||| | ||| | |||| ||||| |||| | | ||||| ||| | ||||| | || |||||| ||||||||||| |
|
|
| T |
10604811 |
tggaagcttagaacaatggttgcatcctgagattttaaatgcagagcctccaacaacgttggaccttggtaaaagatttaacatcatttttgatgttgct |
10604910 |
T |
|
| Q |
318 |
tctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatg |
417 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| || | |||||||||| |
|
|
| T |
10604911 |
tctgcattgcattatcttcatcaagaatgtgagcaattagtcattcattgtgatctaaagccaagcaatgtcctacttgatgatgatatggttgctcatg |
10605010 |
T |
|
| Q |
418 |
tgagtgattttggc |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10605011 |
tgagtgattttggc |
10605024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 10217099 - 10216686
Alignment:
| Q |
18 |
aatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaa |
117 |
Q |
| |
|
|||||| ||||||||| ||| ||| |||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
10217099 |
aatcttgtgtcagaagttaatgttgttgctgtgaaggtcctaaacctccaaaagaatggagctagcaagagttttattgttgaatgtaatgcactcaaaa |
10217000 |
T |
|
| Q |
118 |
atattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaa |
217 |
Q |
| |
|
| |||||||| ||||| |||||| ||||||| ||||||||||||| | ||||||||||| ||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
10216999 |
acattagacaccgaaactcagttaaggttttaacatgttgttctagtacaaactacaaaggtcaagaatttaaagctctagttttttattacatgaaaaa |
10216900 |
T |
|
| Q |
218 |
tggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgct |
317 |
Q |
| |
|
||||||||||||| ||||||||| | ||| | ||| |||||| |||| | ||||||| ||| ||| || | || |||||||| ||||||||| |
|
|
| T |
10216899 |
tggaagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgct |
10216800 |
T |
|
| Q |
318 |
tctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatg |
417 |
Q |
| |
|
|| |||||||||||||| |||| |||||||||||||||| | |||||||||||||||||||||||||||| ||| | |||| |||| |||||||||| |
|
|
| T |
10216799 |
tcggcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatg |
10216700 |
T |
|
| Q |
418 |
tgagtgattttggc |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10216699 |
tgagtgattttggc |
10216686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 10611569 - 10611982
Alignment:
| Q |
18 |
aatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaa |
117 |
Q |
| |
|
|||||| |||||||||| || ||| ||||| | |||||| | |||| |||| |||||||||| ||||||||| ||| |||||||||||||| ||| |
|
|
| T |
10611569 |
aatcttgtgtcagaagacaatgttgttgctataaaggtcttcaacctccaaaacaatggagctcacaagagtttcattgttgaatgtaatgcactaaaat |
10611668 |
T |
|
| Q |
118 |
atattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaa |
217 |
Q |
| |
|
||||||||| |||||| | |||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
10611669 |
ttattagacaccgaaatttagttaagattttaacatgttgttctagtacagattacaaaggtcaagaatttaaagccctagtttttgattacatgaaaaa |
10611768 |
T |
|
| Q |
218 |
tggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgct |
317 |
Q |
| |
|
||||||||||||| ||||||||| | | | | | |||| |||||| || | ||||||| || | ||| ||| | || |||||||| ||||||| | |
|
|
| T |
10611769 |
tggaagcttagaacaatggttgcatcccaaggttttaaatgaagagcatacagcaacattggacctcagtcatagattaaacatcattatggatgttggt |
10611868 |
T |
|
| Q |
318 |
tctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatg |
417 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| || | ||||| |||| |
|
|
| T |
10611869 |
tctgcattacattatcttcataatgaatgtgagcaattggtccttcattgtgatataaagccaagcaatgtcctacttgatgatgatatggttgcacatg |
10611968 |
T |
|
| Q |
418 |
tgagtgattttggc |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10611969 |
tgagtgattttggc |
10611982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 10741049 - 10740636
Alignment:
| Q |
18 |
aatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaa |
117 |
Q |
| |
|
|||||| || ||||||| || ||| |||| || |||||| || |||| ||||||| ||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
10741049 |
aatcttgtgacagaagacaatgttgttgccgtaaaggtcttgaacctcaaaaagaagggagctcacaagagtttcattgttgaatgtaatgcactcaaaa |
10740950 |
T |
|
| Q |
118 |
atattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaa |
217 |
Q |
| |
|
|||||||||| |||||| | ||||||||||| || ||||||||||||| |||||||||||||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
10740949 |
atattagacaccgaaatttagttaagattttgacatgttgttctagtacagattacaaaggtcaaacttttaaagctcttgtttttgattacatgaaaaa |
10740850 |
T |
|
| Q |
218 |
tggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgct |
317 |
Q |
| |
|
||||||||||||| ||||||||| ||| | |||| ||| || |||||| ||||||| ||| ||| ||| | || ||||| | ||||| || |
|
|
| T |
10740849 |
tggaagcttagaacaatggttgcatcttgagattttaaatgcagatcatccaagaacattggaccttggtcatagattaaacatcatgaacgatgtcgcc |
10740750 |
T |
|
| Q |
318 |
tctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatg |
417 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
10740749 |
actgcattacattatcttcaccaagaatgtgaacaattggtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatg |
10740650 |
T |
|
| Q |
418 |
tgagtgattttggc |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10740649 |
tgagtgattttggc |
10740636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 51 - 431
Target Start/End: Complemental strand, 10588747 - 10588367
Alignment:
| Q |
51 |
aaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagacatcgaaatctggttaagattttaa |
150 |
Q |
| |
|
||||| ||| ||||| ||||||| |||||| |||||||||||| ||||||||||||||||||| ||| |||||||||||||| ||| |||||||||| |
|
|
| T |
10588747 |
aaggttctgaaccttaaaaagaagggagctgataagagttttattgccgaatgtaatgcactcaagaatgttagacatcgaaatttggccaagattttaa |
10588648 |
T |
|
| Q |
151 |
cttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaagctggttgcattcaaggat |
250 |
Q |
| |
|
| ||||||||| ||| |||||| |||||||| ||||| |||||| |||||||||| ||||||||||||||||| |||||| ||| | ||| || ||| |
|
|
| T |
10588647 |
catgttgttctggtactgattataaaggtcaagaatttaaagctttagtttttgattacatgaaaaatggaagtttagaacaatggcttcatccatggaa |
10588548 |
T |
|
| Q |
251 |
gatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgag |
350 |
Q |
| |
|
||||| |||||| |||||| | ||||| ||| ||| ||| | ||||||| ||| ||| ||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
10588547 |
tgtgaattcagagcatccaagaacgttggaccttgttcatagattaaatatcactatcgatattgcttctgcactacattatcttcatcatgaatgtgag |
10588448 |
T |
|
| Q |
351 |
caattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttggc |
431 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||| |||||| |||| || |||| |||||||||||||||||||||||| |
|
|
| T |
10588447 |
caggtggtccttcattgtgatataaagccaagcaacgtccttcttgacgatgacatggttgctcatgtgagtgattttggc |
10588367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 10717290 - 10716877
Alignment:
| Q |
18 |
aatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaa |
117 |
Q |
| |
|
|||||| |||||||||| || ||| |||| || |||||| || |||| ||||||| ||||||| ||||||||| ||| |||||||||||||| |||| |
|
|
| T |
10717290 |
aatcttgtgtcagaagacaatgttgttgccgtaaaggtcttgaacctcaaaaagaagggagctcacaagagtttcattgttgaatgtaatgcactaaaaa |
10717191 |
T |
|
| Q |
118 |
atattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaa |
217 |
Q |
| |
|
|||| ||||| |||||||| || ||||| ||||| ||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
10717190 |
atatcagacaccgaaatctagtgaagatattaacatgttgttctagtacagattacaaaggtcaaacttttaaagctctagtttttgattacatgaaaaa |
10717091 |
T |
|
| Q |
218 |
tggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgct |
317 |
Q |
| |
|
||||||||||||| ||||||||| ||| | |||| ||| || |||||| ||||||| ||| ||| ||| | || ||||| || ||||| || |
|
|
| T |
10717090 |
tggaagcttagaacaatggttgcatcttgagattttaaatgcagatcatccaagaacattggaccttggtcatagattaaacatcatgatcgatgtcgcc |
10716991 |
T |
|
| Q |
318 |
tctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatg |
417 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| || ||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
10716990 |
actgcattacattatcttcaccaagaatgtgaacaattaatcattcattgtgatcttaagccaagcaatgtccttcttgatgatgacatggttgctcatg |
10716891 |
T |
|
| Q |
418 |
tgagtgattttggc |
431 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
10716890 |
tgactgattttggc |
10716877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 31 - 431
Target Start/End: Complemental strand, 9836665 - 9836265
Alignment:
| Q |
31 |
aagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagacatcg |
130 |
Q |
| |
|
||||||||||| ||||| | ||||| ||| |||| ||||||| ||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
9836665 |
aagataaagttgttgctataaaggttctgaacctcaaaaagaagggagctcataagagttttattgctgaatgtaatgcactcaaaaatattagacatcg |
9836566 |
T |
|
| Q |
131 |
aaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaa |
230 |
Q |
| |
|
|||| |||| ||| || |||| |||||||||||||||||||| |||||| ||||| |||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
9836565 |
aaatttggtcaaggttataacatgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaagcttagaa |
9836466 |
T |
|
| Q |
231 |
agctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacatt |
330 |
Q |
| |
|
||| | || | ||| || || |||| | || ||| ||||| | ||| ||||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
9836465 |
caatggctttatccctggacagtggattcagagtatcctagaacattgaaccttgttcaaagactaaatatctccattgatattgcttctgcattacatt |
9836366 |
T |
|
| Q |
331 |
atcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttgg |
430 |
Q |
| |
|
|||||||| | |||||||||||| ||||| ||||||||||| | ||||||||||| ||||| | ||||| ||| |||||||| |||||||||||||| |
|
|
| T |
9836365 |
atcttcattgtgaatgtgagcaagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttgg |
9836266 |
T |
|
| Q |
431 |
c |
431 |
Q |
| |
|
| |
|
|
| T |
9836265 |
c |
9836265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 61 - 431
Target Start/End: Complemental strand, 10747322 - 10746952
Alignment:
| Q |
61 |
accttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagacatcgaaatctggttaagattttaacttgttgttc |
160 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||| ||| |||||||||| |||||| || |||||||| |||||| | |||||||||||||| |||||||| |
|
|
| T |
10747322 |
accttcaaaagaagggagctcacaagagtttcattgttgaatgtaatgtactcaagaacattagacaccgaaatttagttaagattttaacgtgttgttc |
10747223 |
T |
|
| Q |
161 |
tagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaagctggttgcattcaaggatgatgaatgta |
260 |
Q |
| |
|
|||||| |||||||||| |||||| || ||||||||||||||| | ||||| |||||||||||||||||| ||||||||| | | | | |||| | |
|
|
| T |
10747222 |
tagtatagattacaaagttcaggagtttaaagctctagttttttattacataaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaa |
10747123 |
T |
|
| Q |
261 |
gagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtcc |
360 |
Q |
| |
|
||||| |||| | | || || ||| || ||| | || |||||||| ||||||||||| |||||||||||||||| | ||||||||||||||| ||| |
|
|
| T |
10747122 |
gagcatccaaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtca |
10747023 |
T |
|
| Q |
361 |
ttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttggc |
431 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
10747022 |
ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggc |
10746952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 11049007 - 11048594
Alignment:
| Q |
18 |
aatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaa |
117 |
Q |
| |
|
|||||| |||| |||| ||| ||| |||||||||| ||| | |||| |||| ||||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
11049007 |
aatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaaa |
11048908 |
T |
|
| Q |
118 |
atattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaa |
217 |
Q |
| |
|
| |||||||| ||||| | |||||| ||||||| ||||||||||||| |||||||||||| | ||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
11048907 |
acattagacaccgaaacttagttaaggttttaacctgttgttctagtacagattacaaaggtgaagaatttaaagcactagtttttgattacatgaaaaa |
11048808 |
T |
|
| Q |
218 |
tggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgct |
317 |
Q |
| |
|
||||||||||||| ||||| ||| | ||| | ||| |||||| |||| | ||||||| ||| | | || | || |||||||| ||||||||| |
|
|
| T |
11048807 |
tggaagcttagaacaatggttacatcctgagattttaaattcagagcatccaaaaacattggaccttggtgataggttaaacatcattatcgatgttgct |
11048708 |
T |
|
| Q |
318 |
tctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatg |
417 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||| | |||||||||||||||||||||| ||||| ||| || | || |||| |||||||||| |
|
|
| T |
11048707 |
tctgcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagtaatgttcttcttaacgacgacatggttgctcatg |
11048608 |
T |
|
| Q |
418 |
tgagtgattttggc |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11048607 |
tgagtgattttggc |
11048594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 34 - 384
Target Start/End: Original strand, 10580879 - 10581228
Alignment:
| Q |
34 |
ataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagacatcgaaa |
133 |
Q |
| |
|
|||| ||| |||| || |||||| || |||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
10580879 |
ataatgttgttgcagtaaaggtcttgaacctccaaaagaaaggagctcacaagagttttattgttgaatgtaatgcactcaaaaatattagacaccaaaa |
10580978 |
T |
|
| Q |
134 |
tctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaagc |
233 |
Q |
| |
|
| | || ||| || |||| ||||||||||||| |||||||||| || ||||| |||||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
10580979 |
tttagtcaaggttctaacatgttgttctagtacaaattacaaaggccaagaatttaaagctttagttttttattacatgaaaaatggaagcttagaacaa |
10581078 |
T |
|
| Q |
234 |
tggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatc |
333 |
Q |
| |
|
||||||||| | ||| | | || ||| | | || | ||||| | ||| ||| ||| | || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
10581079 |
tggttgcatcctcagat-ttaagtgcagaacctctaacaacattgaaccttggtcatagattaaacatcattatggatgttgcttctgcattacattatc |
10581177 |
T |
|
| Q |
334 |
ttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagca |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10581178 |
ttcatcgagaatgtgagcaattggtccttcgttgtgatctaaagccaagca |
10581228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 27 - 431
Target Start/End: Complemental strand, 10652543 - 10652139
Alignment:
| Q |
27 |
tcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagac |
126 |
Q |
| |
|
||||||||||||||| |||| | ||||||||| ||||| |||| || ||| ||| |||||| || || |||||||||||||| |||||||| || | |
|
|
| T |
10652543 |
tcagaagataaagttgttgccataaaggtcctgaaccttcaaaaaaagggatctcacaagagcttcgttgttgaatgtaatgcactaaaaaatatgaggc |
10652444 |
T |
|
| Q |
127 |
atcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagctt |
226 |
Q |
| |
|
|| ||||| |||||||| |||| || |||||||| |||| |||||||||||||| || || || ||| |||| |||||||||||||| || |||| | | |
|
|
| T |
10652443 |
atagaaatttggttaaggttttgacatgttgttcgagtaccgattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaacggaaacct |
10652344 |
T |
|
| Q |
227 |
agaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcatta |
326 |
Q |
| |
|
|||| ||| | ||| || | || ||||||| || | | |||| ||||| ||| ||||| |||||||||||||| |||| ||||||||| |||| |
|
|
| T |
10652343 |
agaacaatggctacatccaggtataatgaatgcagggattcaaagaatgttggaccttgatcaacgactgaatatcattgttgacattgcttctgtatta |
10652244 |
T |
|
| Q |
327 |
cattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgatt |
426 |
Q |
| |
|
||||| ||||||| |||||||||||| |||| |||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
10652243 |
cattaccttcatcatgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgatgacgacatggttgctcatgtgagtgatt |
10652144 |
T |
|
| Q |
427 |
ttggc |
431 |
Q |
| |
|
||||| |
|
|
| T |
10652143 |
ttggc |
10652139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 27 - 431
Target Start/End: Complemental strand, 10660426 - 10660022
Alignment:
| Q |
27 |
tcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagac |
126 |
Q |
| |
|
|||||||||||| || |||| | ||||| ||| ||||| |||| || ||||||| |||||| || ||| |||||||||||||| |||||||| || | |
|
|
| T |
10660426 |
tcagaagataaatttgttgccataaaggttctgaaccttcaaaataagggagctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggc |
10660327 |
T |
|
| Q |
127 |
atcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagctt |
226 |
Q |
| |
|
|| ||||| |||| ||| |||| || |||||||| |||| |||||||||||||| || || || ||| |||| |||||||||||||| ||||||||| | |
|
|
| T |
10660326 |
atagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcct |
10660227 |
T |
|
| Q |
227 |
agaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcatta |
326 |
Q |
| |
|
|||| ||| | ||| || | || ||||||| || | | |||| ||||| ||| ||||| |||||||||||||| |||| ||||| || |||| |
|
|
| T |
10660226 |
agaacaatggctacatccaggtataatgaatgcagggattcaaagattgttggaccttgatcaacgactgaatatcattgttgacattgctagtgtatta |
10660127 |
T |
|
| Q |
327 |
cattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgatt |
426 |
Q |
| |
|
||||| ||||||| |||||||||||| |||| |||||||||||||||||||||| ||||||||| |||| || |||| ||||||||||||||||||| |
|
|
| T |
10660126 |
cattaccttcatcacgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgacgatgacatggttgctcatgtgagtgatt |
10660027 |
T |
|
| Q |
427 |
ttggc |
431 |
Q |
| |
|
||||| |
|
|
| T |
10660026 |
ttggc |
10660022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 9851041 - 9850838
Alignment:
| Q |
29 |
agaagataaagttattgctgtgaaggtcctggaccttgaaaagaat--ggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagac |
126 |
Q |
| |
|
|||||||||| ||||| | | |||||| || |||||||||| || |||| || ||||||||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
9851041 |
agaagataaaattatttccataaaggtcttgaaccttgaaaaaaaaagggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagac |
9850943 |
T |
|
| Q |
127 |
atcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattc-aaagctctagtttttgaatacatgaaaaatggaagct |
225 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| ||||||||||| || |||||| ||||||||||||||| | ||||||| ||||||||||| |
|
|
| T |
9850942 |
atcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagct |
9850843 |
T |
|
| Q |
226 |
tagaa |
230 |
Q |
| |
|
||||| |
|
|
| T |
9850842 |
tagaa |
9850838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 10550686 - 10550867
Alignment:
| Q |
61 |
accttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagacatcgaaatctggttaagattttaacttgttgttc |
160 |
Q |
| |
|
||||| ||||||| |||| || ||||||||| ||| | |||||||||||||| ||||||||||| || ||||||| ||||| ||||| ||||||||||| |
|
|
| T |
10550686 |
accttaaaaagaagggagttcacaagagtttcattgctgaatgtaatgcactaaaaaatattaggcacagaaatctagttaaaattttgacttgttgttc |
10550785 |
T |
|
| Q |
161 |
tagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaagctggttgcat |
242 |
Q |
| |
|
|| | ||||||||||| || || |||||||| || ||||| ||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
10550786 |
cagcacagattacaaaggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcat |
10550867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 9849983 - 9849930
Alignment:
| Q |
254 |
gaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattat |
307 |
Q |
| |
|
|||||||||||| |||| | |||| |||||| |||||||| ||||||||||||| |
|
|
| T |
9849983 |
gaatgtagagcatccaacaacatttgatcttgatcaaagattgaatatcattat |
9849930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 35754837 - 35754910
Alignment:
| Q |
132 |
aatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttga |
205 |
Q |
| |
|
||||| || |||||||||||||||||||| ||| ||||||| || ||| | || ||||||||| | |||||||| |
|
|
| T |
35754837 |
aatcttgtcaagattttaacttgttgttcaagtgttgattataatggtgaagatttcaaagctattgtttttga |
35754910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 431
Target Start/End: Original strand, 12899438 - 12899842
Alignment:
| Q |
27 |
tcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagac |
126 |
Q |
| |
|
||||||||||| ||| |||| || |||||| || | || |||| || || |||| ||||||||| ||| |||||||||||||||||||| ||| ||| |
|
|
| T |
12899438 |
tcagaagataatgttgttgcagtaaaggtcttgaatctgcaaaaaaagggtgctcacaagagtttcattttagaatgtaatgcactcaaaaacattcgac |
12899537 |
T |
|
| Q |
127 |
atcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagctt |
226 |
Q |
| |
|
| |||||| |||||||| ||||||| ||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12899538 |
accgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagctt |
12899637 |
T |
|
| Q |
227 |
agaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcatta |
326 |
Q |
| |
|
|||| ||||| ||| | || |||||| | | | |||| | ||||| | ||| ||| ||| | || ||||| || |||||||||||||||||| |
|
|
| T |
12899638 |
agaacaatggttacatcccgagactttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcatta |
12899737 |
T |
|
| Q |
327 |
cattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgatt |
426 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
12899738 |
cattatcttcatcgagaatgtgagcaattagtctttcattgtgatataaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgatt |
12899837 |
T |
|
| Q |
427 |
ttggc |
431 |
Q |
| |
|
||||| |
|
|
| T |
12899838 |
ttggc |
12899842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 75 - 431
Target Start/End: Original strand, 12948560 - 12948916
Alignment:
| Q |
75 |
ggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagacatcgaaatctggttaagattttaacttgttgttctagtattgattaca |
174 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||||||| |||||||||||||| |||||| |||||||| ||||||| ||||||||||| | || ||| |
|
|
| T |
12948560 |
ggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaataaca |
12948659 |
T |
|
| Q |
175 |
aaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagc |
274 |
Q |
| |
|
|||| || ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| | || |||||| | | | |||| | | |
|
|
| T |
12948660 |
aaggccaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaac |
12948759 |
T |
|
| Q |
275 |
attggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatcta |
374 |
Q |
| |
|
|||| | ||| || ||| | || |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
12948760 |
attgaaccttcgtcgtagattaaacatcattatcgatgttgcttctgcattacattatcttcatcgataatgtgagcaattagtccttcattgtgatcta |
12948859 |
T |
|
| Q |
375 |
aagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttggc |
431 |
Q |
| |
|
|| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
12948860 |
aaaccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggc |
12948916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 25 - 431
Target Start/End: Original strand, 12932145 - 12932551
Alignment:
| Q |
25 |
tgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattag |
124 |
Q |
| |
|
||||||||||||| ||| |||| || |||||| || | || |||| || ||||||| ||||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
12932145 |
tgtcagaagataatgttgttgcagtaaaggtcttgaatctgcaaaaaaagggagctcacaagagtttcattgttgaatgtaacgcactcaaaaatattag |
12932244 |
T |
|
| Q |
125 |
acatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagc |
224 |
Q |
| |
|
||| |||||| |||||||| ||||||| ||||||||||| | ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12932245 |
acaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagcactagtttttgaatacatgaaaaatggaagc |
12932344 |
T |
|
| Q |
225 |
ttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcat |
324 |
Q |
| |
|
|||||| ||||| ||| | || |||||| | | | |||| | ||||| | ||| ||| ||| | || ||||| || |||||||||||||||| |
|
|
| T |
12932345 |
ttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcat |
12932444 |
T |
|
| Q |
325 |
tacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtga |
424 |
Q |
| |
|
| ||||| |||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
12932445 |
tgcattaccttcatcgagaatgtgagcagttaatccttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtga |
12932544 |
T |
|
| Q |
425 |
ttttggc |
431 |
Q |
| |
|
||||||| |
|
|
| T |
12932545 |
ttttggc |
12932551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 75 - 430
Target Start/End: Original strand, 12957994 - 12958349
Alignment:
| Q |
75 |
ggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagacatcgaaatctggttaagattttaacttgttgttctagtattgattaca |
174 |
Q |
| |
|
||||||| ||||||||| ||| |||||||| |||||||||||||||||||| |||||| |||||| | ||||||| ||||||||||| | |||||| |
|
|
| T |
12957994 |
ggagctcacaagagtttcattgttgaatgtaacgcactcaaaaatattagacaccgaaatttggttagggttttaacatgttgttctagcacaaattaca |
12958093 |
T |
|
| Q |
175 |
aaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaagctggttgcattcaaggatgatgaatgtagag-caaccaagag |
273 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | || |||||| ||| | |||| | |
|
|
| T |
12958094 |
aaggtcaagaatttaaagctctagtttttgaatacatggaaaatggaagcttagaacagtggttacatcctcaaattttgaatgc-gagtcctccaacaa |
12958192 |
T |
|
| Q |
274 |
cattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatct |
373 |
Q |
| |
|
||||| | ||| ||| ||| | || ||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |
|
|
| T |
12958193 |
cattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcagttaatccttcactgtgatct |
12958292 |
T |
|
| Q |
374 |
aaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttgg |
430 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
12958293 |
aaagccaagcaatgtccttcttgatggtgacatggttgctcatgtgagtgattttgg |
12958349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 99 - 431
Target Start/End: Original strand, 12907130 - 12907462
Alignment:
| Q |
99 |
gaatgtaatgcactcaaaaatattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctag |
198 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||| | ||||||||||||| ||||| |||||||||| |
|
|
| T |
12907130 |
gaatgtaacgcactcaaaaatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctag |
12907229 |
T |
|
| Q |
199 |
tttttgaatacatgaaaaatggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||| | | |||||| | | | |||| | ||||| | ||| || ||| | || |
|
|
| T |
12907230 |
tttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgaaactttgaatgcaaatcctccaacaacattgaaccttggtcttagattaaa |
12907329 |
T |
|
| Q |
299 |
tatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgat |
398 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
12907330 |
catcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcagttaatcctccattgtgatctaaaaccaagcaatgtccttcttgat |
12907429 |
T |
|
| Q |
399 |
gaagacaatgttgctcatgtgagtgattttggc |
431 |
Q |
| |
|
|| |||| ||||||||| |||||||||||||| |
|
|
| T |
12907430 |
gatgacatggttgctcatttgagtgattttggc |
12907462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 99 - 431
Target Start/End: Complemental strand, 17923672 - 17923340
Alignment:
| Q |
99 |
gaatgtaatgcactcaaaaatattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctag |
198 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||| | ||||||||||||| ||||| |||||||||| |
|
|
| T |
17923672 |
gaatgtaacgcactcaaaaatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctag |
17923573 |
T |
|
| Q |
199 |
tttttgaatacatgaaaaatggaagcttagaaagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||| | || |||||| | | | |||| | ||||| | ||| ||| ||| | || |
|
|
| T |
17923572 |
tttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaa |
17923473 |
T |
|
| Q |
299 |
tatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgat |
398 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
17923472 |
catcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgagcagttaatccttcattgtgatctaaaaccaagcaatgtccttcttgat |
17923373 |
T |
|
| Q |
399 |
gaagacaatgttgctcatgtgagtgattttggc |
431 |
Q |
| |
|
|| |||| |||||||||||||||||||||||| |
|
|
| T |
17923372 |
gatgacatggttgctcatgtgagtgattttggc |
17923340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 130 - 431
Target Start/End: Original strand, 7264 - 7565
Alignment:
| Q |
130 |
gaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttaga |
229 |
Q |
| |
|
||||| |||||| | ||||||| ||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7264 |
gaaatttggttagggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttaga |
7363 |
T |
|
| Q |
230 |
aagctggttgcattcaaggatgatgaatgtagagcaaccaagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacat |
329 |
Q |
| |
|
| ||||| ||| | || |||||| | | | |||| | ||||| | ||| ||| ||| | || ||||| || ||||||||||||||||||||| |
|
|
| T |
7364 |
acagtggttacatcctgagactttgaatgcaaatcctccaataacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacat |
7463 |
T |
|
| Q |
330 |
tatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttg |
429 |
Q |
| |
|
|| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
7464 |
taacttcatcgagaatgtgagcaattaatacttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttg |
7563 |
T |
|
| Q |
430 |
gc |
431 |
Q |
| |
|
|| |
|
|
| T |
7564 |
gc |
7565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 242
Target Start/End: Complemental strand, 31467461 - 31467288
Alignment:
| Q |
69 |
aagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagacatcgaaatctggttaagattttaacttgttgttctagtattg |
168 |
Q |
| |
|
||||| ||||||| ||||||||| || | ||||| ||||||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| | |
|
|
| T |
31467461 |
aagaaaggagctcacaagagtttccttgctgaatgcaatgcactcaaaaatattagacaccgaaatttggttaagattttaacaagctgttccagtacag |
31467362 |
T |
|
| Q |
169 |
attacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaagctggttgcat |
242 |
Q |
| |
|
||| ||||| ||| ||||| |||||||| ||||| || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
31467361 |
atttcaaagatcaagaatttaaagctcttgttttcgagtacatgaaaaacggaagcttagaaagttggttgcat |
31467288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 431
Target Start/End: Complemental strand, 31467233 - 31467099
Alignment:
| Q |
297 |
aatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattg |
396 |
Q |
| |
|
||||| |||||||| |||||||| ||||| ||||||||||||| |||||| ||||| ||| ||||||||||| ||||||| ||||| || ||| ||| |
|
|
| T |
31467233 |
aatattattattgacgttgcttcggcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcctagcaacgttcttcttg |
31467134 |
T |
|
| Q |
397 |
atgaagacaatgttgctcatgtgagtgattttggc |
431 |
Q |
| |
|
|||| | || ||||||||||||||||||||| |
|
|
| T |
31467133 |
atgattctatggtagctcatgtgagtgattttggc |
31467099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 28605566 - 28605696
Alignment:
| Q |
99 |
gaatgtaatgcactcaaaaatattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctag |
198 |
Q |
| |
|
||||| ||||||||||||| ||| | ||| | ||||| || ||||||||||| |||||||| ||||| |||||||| ||| | |||||||||||| ||| |
|
|
| T |
28605566 |
gaatgcaatgcactcaaaagtatccgtcataggaatcttgtcaagattttaacatgttgttcaagtatggattacaatggtaatgaattcaaagctttag |
28605665 |
T |
|
| Q |
199 |
tttttgaatacatgaaaaatggaagcttaga |
229 |
Q |
| |
|
||||||| |||||| |||||||||| ||||| |
|
|
| T |
28605666 |
tttttgagtacatggaaaatggaagtttaga |
28605696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 430
Target Start/End: Original strand, 28605825 - 28605894
Alignment:
| Q |
361 |
ttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttgg |
430 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| || || | |||| ||||||||||||||||||||||| |
|
|
| T |
28605825 |
ttcattgtgatttaaagccaagcaatattcttcttcataatgacatggttgctcatgtgagtgattttgg |
28605894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 431
Target Start/End: Complemental strand, 39875899 - 39875829
Alignment:
| Q |
361 |
ttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttggc |
431 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||| || |||| |||||||||||||||||||||||| |
|
|
| T |
39875899 |
ttcattgtgatttaaaaccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggc |
39875829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 431
Target Start/End: Complemental strand, 39884022 - 39883952
Alignment:
| Q |
361 |
ttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttggc |
431 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||| || |||| |||||||||||||||||||||||| |
|
|
| T |
39884022 |
ttcattgtgatttaaaaccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggc |
39883952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 431
Target Start/End: Complemental strand, 39890976 - 39890906
Alignment:
| Q |
361 |
ttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttggc |
431 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||| || |||| |||||||||||||||||||||||| |
|
|
| T |
39890976 |
ttcattgtgatttaaaaccaagcaatgtccttcttgaagatgacatggttgctcatgtgagtgattttggc |
39890906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 39899036 - 39898834
Alignment:
| Q |
27 |
tcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagac |
126 |
Q |
| |
|
|||||||| | |||| ||||||| ||||| || ||||| | ||||| ||||||| || ||||| ||| ||||||||||||| ||| |||||| || | |
|
|
| T |
39899036 |
tcagaagaaagagttgttgctgtaaaggttctaaaccttcagaagaaaggagctcataaaagtttcattgccgaatgtaatgctttcagaaatatcaggc |
39898937 |
T |
|
| Q |
127 |
atcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagctt |
226 |
Q |
| |
|
|| ||||||| || ||| || | || ||||| |||||| | ||| | | |||| | || || ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
39898936 |
atagaaatctagtcaaggttatcacatgttgctctagtgtggatcatagaggtaatgactttaaagcaatagtttttgaatacatgacaaatggaagctt |
39898837 |
T |
|
| Q |
227 |
aga |
229 |
Q |
| |
|
||| |
|
|
| T |
39898836 |
aga |
39898834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 39876224 - 39876022
Alignment:
| Q |
27 |
tcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagac |
126 |
Q |
| |
|
|||||||| | |||| ||||||| ||||| || ||||| | ||||| ||||||| || ||||| || ||||||||||||| | | |||||| || | |
|
|
| T |
39876224 |
tcagaagaaagagttgttgctgtaaaggttctaaaccttcagaagaaaggagctcataaaagtttccttgccgaatgtaatgcttttagaaatatcaggc |
39876125 |
T |
|
| Q |
127 |
atcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagctt |
226 |
Q |
| |
|
|| ||||||| || |||||| | || ||||| |||||| | ||| |||||||| | || || || || |||||| |||||||||||||||||| ||||| |
|
|
| T |
39876124 |
atagaaatctagtcaagattatcacatgttgctctagtgtggatcacaaaggtgacgactttaaggcaatagtttatgaatacatgaaaaatgggagctt |
39876025 |
T |
|
| Q |
227 |
aga |
229 |
Q |
| |
|
||| |
|
|
| T |
39876024 |
aga |
39876022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 39884347 - 39884145
Alignment:
| Q |
27 |
tcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagac |
126 |
Q |
| |
|
|||||||| | |||| ||||||| ||||| || ||||| | ||||| ||||||| || ||||| || ||||||||||||| | | |||||| || | |
|
|
| T |
39884347 |
tcagaagaaagagttgttgctgtaaaggttctaaaccttcagaagaaaggagctcataaaagtttccttgccgaatgtaatgcttttagaaatatcaggc |
39884248 |
T |
|
| Q |
127 |
atcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagctt |
226 |
Q |
| |
|
|| ||||||| || |||||| | || ||||| |||||| | ||| |||||||| | || || || || |||||| ||||||||||| |||||| ||||| |
|
|
| T |
39884247 |
atagaaatctagtcaagattatcacatgttgctctagtgtggatcacaaaggtgacgactttaaggcaatagtttatgaatacatgacaaatgggagctt |
39884148 |
T |
|
| Q |
227 |
aga |
229 |
Q |
| |
|
||| |
|
|
| T |
39884147 |
aga |
39884145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 39891301 - 39891099
Alignment:
| Q |
27 |
tcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcccaagagttttattaccgaatgtaatgcactcaaaaatattagac |
126 |
Q |
| |
|
|||||||| | |||| ||||||| ||||| || ||||| | ||||| ||||||| || ||||| || ||||||||||||| | | |||||| || | |
|
|
| T |
39891301 |
tcagaagaaagagttgttgctgtaaaggttctaaaccttcagaagaaaggagctcataaaagtttccttgccgaatgtaatgcttttagaaatatcaggc |
39891202 |
T |
|
| Q |
127 |
atcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagctt |
226 |
Q |
| |
|
|| ||||||| || |||||| | || ||||| |||||| | ||| |||||||| | || || || || |||||| ||||||||||| |||||| ||||| |
|
|
| T |
39891201 |
atagaaatctagtcaagattatcacatgttgctctagtgtggatcacaaaggtgacgactttaaggcaatagtttatgaatacatgacaaatgggagctt |
39891102 |
T |
|
| Q |
227 |
aga |
229 |
Q |
| |
|
||| |
|
|
| T |
39891101 |
aga |
39891099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University