View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5578_low_1 (Length: 506)
Name: NF5578_low_1
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 53 - 484
Target Start/End: Complemental strand, 3896317 - 3895885
Alignment:
| Q |
53 |
aaataattagcttcaaatttaagaagtattgcatagcaaaataatttttacttagaatgcatatcaggctatgtttcaagtaacagtgtaggttttcaac |
152 |
Q |
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| T |
3896317 |
aaataattagcttcaaatttaagaagtattgcatggcaaaataatttttacttagaatgcatatcaggctatgtttcaagaaactgtgtaggttttcagc |
3896218 |
T |
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| Q |
153 |
acattcagaaagtcggcactgttaagaaaggacaaaatgccacactcttgctagtcgaatgattaagattgtatcattagaagtcaatggattgtagtct |
252 |
Q |
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| T |
3896217 |
acatttagaaagtcagcactgttaagaaaggacaaaatgccacactcttgctagttgaatgcttaagattgtatcattagaagtcaatgggttgtagtct |
3896118 |
T |
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| Q |
253 |
taccggtaatgttgtccacctttttctgatttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggctagcatatctggt |
352 |
Q |
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| T |
3896117 |
tactggtaatgttgtccacctttttctgatttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggctagcatatctggt |
3896018 |
T |
|
| Q |
353 |
tcaaatctgcaataagctcatatctggttcatgaatgagattgttagtggcaattacaaa-----------gcatcccaaattcttatttctaacattgg |
441 |
Q |
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| T |
3896017 |
tcaaatctgcaataa--------aagaatcatga--gagattgttaattgcaattacaaaggatcctatgcgcatcccaaactcttatttctaacattgg |
3895928 |
T |
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| Q |
442 |
aatgaaacaagaaaatgtgttattaacgtattgttgttattga |
484 |
Q |
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| T |
3895927 |
aatgaaacaagaaaatgtgttaataatgtattgttgttattga |
3895885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 43364791 - 43364867
Alignment:
| Q |
281 |
atttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggctagcatatctggttcaaa |
357 |
Q |
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| T |
43364791 |
atttcaccaagttcttttctttccttttctcccccaccataatagcaaccagagaatgcaagcatatccggttcaaa |
43364867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 41600471 - 41600587
Alignment:
| Q |
241 |
ggattgtagtcttaccggtaatgttgtccacctttttctgatttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggct |
340 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||| || |
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| T |
41600471 |
ggattgtagtcttacaggcaatgttgtccacctttttctgatttcaccaagctcttgtctttctttttcacccccaccaaaataacaacctgaaaatgcc |
41600570 |
T |
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| Q |
341 |
agcatatctggttcaaa |
357 |
Q |
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||||| ||||| ||||| |
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| T |
41600571 |
agcatgtctggctcaaa |
41600587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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