View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5578_low_10 (Length: 244)
Name: NF5578_low_10
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 40369172 - 40369400
Alignment:
| Q |
1 |
tttttgttgctgttttcacaatgtatgtagcttctgccaaatgcttagtacaaaattcttaaatttaataaactttaaactagaatagtacatgggtaat |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40369172 |
ttttttttgctgttttcacaatgtatgtagcttctgccaaatgcttagtacaaaattcttaaatttagtaaactttaaactagaatagtacatgggtaat |
40369271 |
T |
|
| Q |
101 |
gtagaacaagattgttttgtttgaatagtattttaggatggtaaatggtagctatatggaatgcagttctctttttgtgaaattctgaaccatttctgga |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40369272 |
gtagaacaagtttgttttgtttgaatagtattttaggatggtaaatggtagctatatggaatgcagttctctttttgtgaaattctgaaccatttctgga |
40369371 |
T |
|
| Q |
201 |
ttatcaaactcagttcaaacacttgtttt |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
40369372 |
ttatcaaactcagttcaaacacttatttt |
40369400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University