View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5578_low_12 (Length: 237)
Name: NF5578_low_12
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578_low_12 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43702626 - 43702405
Alignment:
| Q |
1 |
ttggtctgcaccaaatgctaaagaacatgaaataccaccatttccaattgctatcagaattagggcagagaataacattgccaattgacctggtgttgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43702626 |
ttggtctgcaccaaatgctaaagaacatgaaataccaccatttccaattgctatcagaattagggcagagaataacattgccaattgacctggtgttgct |
43702527 |
T |
|
| Q |
101 |
gattcacagccttcagatggatggttgcaagcaggaggccgtgccgacgggatcatggctgttaaccacagcagtgacattccctataacaacaaacaaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43702526 |
gattcacaaccttcagatggatggttgcaagcaggaggccgtgccgacgggatcatggctgttaaccacagcagtgacattccctataacaacaaacaaa |
43702427 |
T |
|
| Q |
201 |
aaagaggctttattataccaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
43702426 |
aaagaggctttattataccaat |
43702405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 43713450 - 43713245
Alignment:
| Q |
1 |
ttggtctgcaccaaatgctaaagaacatgaaataccaccatttccaattgctatcagaattagggcagagaataacattgccaattgacctggtgttgct |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43713450 |
ttggtctgcaccaaatgctaaagaacatgtaataccaccatttccaattgctatcagaattaaggcagagaataacattgccaattgacctggtgttgct |
43713351 |
T |
|
| Q |
101 |
gattcacagccttcagatggatggttgcaagcaggaggccgtgccgacgggatcatggctgttaaccacagcagtgacattccctataacaacaaacaaa |
200 |
Q |
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| T |
43713350 |
gattcacaaccttcagatggatggttgcaagcagaaggccgtgccgccgggatcatggctgttaaccacaacagtgacattccctataacaacaaacaaa |
43713251 |
T |
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| Q |
201 |
aaagag |
206 |
Q |
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|||||| |
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| T |
43713250 |
aaagag |
43713245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 43686126 - 43685927
Alignment:
| Q |
1 |
ttggtctgcaccaaatgctaaagaacatgaaataccaccatttccaattgctatcagaattagggcagagaataacattgccaattgacctggtgttgct |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||||||| |||||||||| ||||| |
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| T |
43686126 |
ttggtctgcaccaaatgctaaagaacatgaaataccaccatttccaattcctatcagaatcaacgcagagagtaacattgccatttgacctggttttgct |
43686027 |
T |
|
| Q |
101 |
gattcacagccttcagatggatggttgcaagcaggaggccgtgccgacgggatcatggctgttaaccacagcagtgacattccctataacaacaaacaaa |
200 |
Q |
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||| ||||||||||| ||||| | |||||||||||||| | |||| |||| |||||||||||||||||||| || |||||||| |||||||||||||| |
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| T |
43686026 |
gatatacagccttcaggtggattgctgcaagcaggaggctgcgccgctgggaccatggctgttaaccacagcattgccattccctgtaacaacaaacaaa |
43685927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 43727352 - 43727149
Alignment:
| Q |
1 |
ttggtctgcaccaaatgctaaagaacatgaaataccaccatttccaattgctatcagaattagggcagagaataacattgccaattgacctggtgttgct |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||| |||| || ||| | ||| |||| ||||||||||| |||||||| ||||||| |
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| T |
43727352 |
ttggtctgcaccaaatgctatggaacatgaaagaccaccatttcctattgacatgagaccaaaggcggagagtaacattgccatttgacctgttgttgct |
43727253 |
T |
|
| Q |
101 |
gattcacagccttcagatggatggttgcaagcaggaggccgtgccgacgggatcatggctgttaaccacagcagtgacattccctataacaacaaacaaa |
200 |
Q |
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|||| |||||||| | ||||| |||||| | ||| |||||||||| |||||||||||||||||||||| || | |||||||||| |||| ||| ||| |
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| T |
43727252 |
gatttacagccttttgttggattgttgcacggaggcggccgtgccgctgggatcatggctgttaaccacaacattcccattccctattacaa-aaagaaa |
43727154 |
T |
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| Q |
201 |
aaaga |
205 |
Q |
| |
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||||| |
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| T |
43727153 |
aaaga |
43727149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 24570 - 24652
Alignment:
| Q |
1 |
ttggtctgcaccaaatgctaaagaacatgaaataccaccatttccaattgctatcagaattagggcagagaataacattgcca |
83 |
Q |
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|||||||||||||||||| | |||||||||| ||||||| || |||||| || ||||| | |||||| | ||||||||||| |
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| T |
24570 |
ttggtctgcaccaaatgccatggaacatgaaacaccaccacttgcaattgaaatgagaataaaggcagatattaacattgcca |
24652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 25273152 - 25273070
Alignment:
| Q |
1 |
ttggtctgcaccaaatgctaaagaacatgaaataccaccatttccaattgctatcagaattagggcagagaataacattgcca |
83 |
Q |
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|||||||||||||||||| | |||||||||| ||||||| || |||||| || ||||| | |||||| | ||||||||||| |
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| T |
25273152 |
ttggtctgcaccaaatgccatggaacatgaaacaccaccacttgcaattgaaatgagaataaaggcagatattaacattgcca |
25273070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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