View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5578_low_13 (Length: 226)
Name: NF5578_low_13
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 4794863 - 4795035
Alignment:
| Q |
19 |
tgttggtgaatcaatttgggttatgaactgataaatctcaaaagcattgagcacaggaggaagatcagaatctgaggttgcactaatgttgaaccaaaca |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4794863 |
tgttggtgaatcaagttgggttatgaactgataaatctcaaaagcattgagcacaggaggaagatcagaatctgaggttgcactaatgttgaaccaaaca |
4794962 |
T |
|
| Q |
119 |
tcaccttgagttttgtagttgagtgtaataggtttcaagtaatcaagaactaagggctgagagagcacaggtt |
191 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4794963 |
tccccttgagttttgtagttgagtgtaataggtttcaagtaatcaagaactaagggctgagagagcacaggtt |
4795035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 4830886 - 4831021
Alignment:
| Q |
53 |
atctcaaaagcattgagcacaggaggaagatcagaatctgaggttgcactaatgttgaaccaaacatcaccttgagttttgtagttgagtgtaataggtt |
152 |
Q |
| |
|
|||||||| |||||||| | ||||||| ||| ||||| ||||||||||||||||| |||||||||||||||| ||||||| |||||||||| ||||| | |
|
|
| T |
4830886 |
atctcaaaggcattgagtataggaggagcatccgaatcggaggttgcactaatgttaaaccaaacatcacctttagttttgaagttgagtgttataggct |
4830985 |
T |
|
| Q |
153 |
tcaagtaatcaagaactaagggctgagagagcacag |
188 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
4830986 |
tcaagtaatcaagaactaaaggctcagagagcacag |
4831021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 4849420 - 4849573
Alignment:
| Q |
18 |
atgttggtgaatcaatttgggttatgaactgataaatctcaaaagcattgagcacaggaggaagatcagaatctgaggttgcactaatgttgaaccaaac |
117 |
Q |
| |
|
||||||||||||||| ||| || |||| || ||| ||||| || |||||||| | ||||||| ||| ||||| |||||||| |||||||| |||||||| |
|
|
| T |
4849420 |
atgttggtgaatcaagttgagtcatgagcttatagatctcgaaggcattgagtataggaggagcatccgaatccgaggttgcgctaatgttaaaccaaac |
4849519 |
T |
|
| Q |
118 |
atcaccttgagttttgtagttgagtgtaataggtttcaagtaatcaagaactaa |
171 |
Q |
| |
|
|| |||||||||| || |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4849520 |
attaccttgagttgtgaagttgagtgtaacaggtttcaagtaatcaagaactaa |
4849573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 4804961 - 4805126
Alignment:
| Q |
26 |
gaatcaatttgggttatgaactgataaatctcaaaagcattgagcacaggaggaagatcagaatctgaggttgcactaatgttgaaccaaacatcacctt |
125 |
Q |
| |
|
||||||| | |||| |||| || ||| ||||| |||||||||| | ||||||| || ||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
4804961 |
gaatcaagtggggtaatgagcttatagatctcgtaagcattgagtataggaggagcattcgaatctgaggttgcactaatgttaaacaaaacatcacctt |
4805060 |
T |
|
| Q |
126 |
gagttttgtagttgagtgtaataggtttcaagtaatcaagaactaagggctgagagagcacaggtt |
191 |
Q |
| |
|
|| ||||| |||||| |||| ||| ||||||||||||||||||| |||| |||| | ||||||| |
|
|
| T |
4805061 |
gaattttgatgttgagagtaacaggcttcaagtaatcaagaactataggcttagaggggacaggtt |
4805126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University