View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5578_low_2 (Length: 486)

Name: NF5578_low_2
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5578_low_2
NF5578_low_2
[»] chr6 (1 HSPs)
chr6 (21-486)||(32950357-32950833)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 21 - 486
Target Start/End: Original strand, 32950357 - 32950833
Alignment:
Q  21 gaaactctttatatgatatgcaacatgccaaattgttcccactgaaaaaca-----tccaatactgtgtacaaatgaaaaccatattctttatattttct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||| ||||||||||||||||||||||| ||||||||  ||    
T  32950357 gaaactctttatatgatatgcaacatgccaaattgttcccactgaaaaacagcttctccaataatgtgtacaaatgaaaaccatatt-tttatatt--ct 32950453  T
Q  116 ttttggggtgaattctgtttaccttttgtgtggtacaatcagagagcagttaaatcaatatctaaataaaagac----------caaaacataaaccaca 205  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||          ||||||||||||||||    
T  32950454 ttttggggtgaattctgtttaccttttgtgtggtataatcagagagcagttaaatcaatatttaaataaaagactataaagggccaaaacataaaccaca 32950553  T
Q  206 tggattttcttcatcttaagcctccaactgcttttacacttaagctgccttagtgatcctgggtggctggctgctttcgaacttcagttatcttagcttt 305  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||    
T  32950554 tggattttcttcatcttaagcctccaactgcttttaaacttaagctgccttagcgatcctgggtggctggcttctttcgaacttca-ttatcttagcttt 32950652  T
Q  306 ctgccttcggtcttcagctttctgcattctgtctttagctttccgctttctgtctctcagctttagaatttcgatgttagctttcctccttttatcttca 405  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950653 ctgctttcggtcttcagctttctgcattctgtctttagctttccgctttctgtctctcagctttagaatttcgatgttagctttcctccttttatcttca 32950752  T
Q  406 agattttgaacttcagcgaaatctatctcttcaccgatcctcattctttcttcagctctcagcttttggtcttcagccctc 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32950753 agattttgaacttcagcgaaatctatctcttcaccgatcctcattctttcttcagctctcagcttttggttttcagccctc 32950833  T

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