View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5578_low_3 (Length: 482)

Name: NF5578_low_3
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5578_low_3
NF5578_low_3
[»] chr4 (22 HSPs)
chr4 (13-467)||(23990530-23990983)
chr4 (170-467)||(23983835-23984132)
chr4 (13-173)||(23984162-23984321)
chr4 (13-170)||(23967233-23967389)
chr4 (371-467)||(23966847-23966944)
chr4 (271-312)||(27123354-27123395)
chr4 (272-312)||(35743310-35743350)
chr4 (359-398)||(679401-679440)
chr4 (355-398)||(6428124-6428167)
chr4 (368-399)||(14172090-14172121)
chr4 (355-398)||(50746081-50746124)
chr4 (369-403)||(20656159-20656193)
chr4 (355-393)||(23676934-23676972)
chr4 (355-401)||(32420976-32421022)
chr4 (369-403)||(39691065-39691099)
chr4 (369-398)||(1133048-1133077)
chr4 (253-309)||(2592314-2592368)
chr4 (256-312)||(14011248-14011302)
chr4 (356-393)||(23676803-23676840)
chr4 (346-390)||(9680941-9680985)
chr4 (355-387)||(46797120-46797152)
chr4 (358-398)||(53315435-53315475)
[»] chr6 (15 HSPs)
chr6 (354-403)||(12111072-12111121)
chr6 (348-403)||(30524036-30524091)
chr6 (256-397)||(2455824-2455958)
chr6 (271-312)||(2460153-2460194)
chr6 (271-312)||(7785746-7785787)
chr6 (270-312)||(281850-281892)
chr6 (356-398)||(29296496-29296538)
chr6 (274-312)||(31583709-31583747)
chr6 (271-312)||(9667987-9668028)
chr6 (271-312)||(27909640-27909681)
chr6 (348-393)||(31338076-31338121)
chr6 (271-312)||(34404116-34404157)
chr6 (274-314)||(2023386-2023426)
chr6 (348-392)||(3217039-3217083)
chr6 (372-400)||(27984247-27984275)
[»] chr2 (15 HSPs)
chr2 (332-389)||(39622034-39622091)
chr2 (356-398)||(43529779-43529821)
chr2 (256-312)||(34652038-34652092)
chr2 (258-304)||(16867755-16867799)
chr2 (355-398)||(37419588-37419631)
chr2 (356-398)||(750841-750883)
chr2 (258-303)||(35329829-35329872)
chr2 (271-312)||(1160742-1160783)
chr2 (271-312)||(1939334-1939375)
chr2 (370-403)||(28803446-28803479)
chr2 (356-393)||(30552569-30552606)
chr2 (277-314)||(32615954-32615991)
chr2 (356-400)||(6209578-6209622)
chr2 (359-403)||(15370239-15370283)
chr2 (370-398)||(18525162-18525190)
[»] chr3 (13 HSPs)
chr3 (355-403)||(41057261-41057309)
chr3 (355-398)||(36189735-36189778)
chr3 (332-403)||(45541654-45541725)
chr3 (271-316)||(21862173-21862218)
chr3 (256-312)||(37273148-37273202)
chr3 (332-388)||(27795944-27796000)
chr3 (256-312)||(29771852-29771906)
chr3 (355-398)||(11253607-11253650)
chr3 (356-398)||(12985284-12985326)
chr3 (355-404)||(3622367-3622416)
chr3 (332-389)||(25925812-25925869)
chr3 (371-403)||(15304284-15304316)
chr3 (355-398)||(43875571-43875615)
[»] chr7 (19 HSPs)
chr7 (355-398)||(7513665-7513708)
chr7 (369-403)||(35267469-35267503)
chr7 (332-398)||(753052-753118)
chr7 (356-398)||(1418526-1418568)
chr7 (355-393)||(2825162-2825200)
chr7 (355-393)||(3019889-3019927)
chr7 (270-312)||(3468640-3468682)
chr7 (344-402)||(3836600-3836658)
chr7 (270-312)||(12234891-12234933)
chr7 (345-399)||(44615024-44615078)
chr7 (369-398)||(19302484-19302513)
chr7 (357-394)||(22759269-22759306)
chr7 (369-398)||(34036037-34036066)
chr7 (271-312)||(47395100-47395141)
chr7 (370-398)||(1431278-1431306)
chr7 (359-403)||(6825028-6825072)
chr7 (369-401)||(9210941-9210973)
chr7 (256-303)||(25596047-25596092)
chr7 (371-403)||(44289959-44289991)
[»] chr8 (17 HSPs)
chr8 (355-388)||(1113216-1113249)
chr8 (355-403)||(7008704-7008752)
chr8 (347-394)||(44865491-44865538)
chr8 (356-398)||(10727451-10727493)
chr8 (369-398)||(7711972-7712001)
chr8 (375-403)||(1821955-1821983)
chr8 (375-403)||(1856400-1856428)
chr8 (272-312)||(6950350-6950390)
chr8 (257-304)||(7918456-7918501)
chr8 (356-404)||(10939482-10939530)
chr8 (369-401)||(11376823-11376855)
chr8 (371-403)||(20186380-20186412)
chr8 (371-403)||(20205447-20205479)
chr8 (274-314)||(26284795-26284835)
chr8 (369-401)||(32840904-32840936)
chr8 (276-312)||(42597470-42597506)
chr8 (367-403)||(43393688-43393724)
[»] chr5 (9 HSPs)
chr5 (332-393)||(2568741-2568802)
chr5 (258-304)||(33533549-33533593)
chr5 (355-401)||(10771806-10771852)
chr5 (332-398)||(11297117-11297183)
chr5 (276-314)||(18704036-18704074)
chr5 (256-305)||(38104866-38104913)
chr5 (369-398)||(28578965-28578994)
chr5 (370-403)||(33961804-33961837)
chr5 (356-393)||(35551058-35551095)
[»] chr1 (11 HSPs)
chr1 (355-403)||(5082931-5082979)
chr1 (355-398)||(12564420-12564463)
chr1 (271-314)||(49125871-49125914)
chr1 (274-312)||(4549260-4549298)
chr1 (355-401)||(32859865-32859911)
chr1 (271-304)||(26916228-26916261)
chr1 (271-312)||(30259488-30259529)
chr1 (271-304)||(33108632-33108665)
chr1 (271-312)||(35017603-35017644)
chr1 (328-385)||(44928125-44928182)
chr1 (355-403)||(23373229-23373277)
[»] scaffold0153 (2 HSPs)
scaffold0153 (271-312)||(6496-6537)
scaffold0153 (271-312)||(13516-13557)


Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Complemental strand, 23990983 - 23990530
Alignment:
Q  13 atactgattgcaggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatgagt 112  Q
    ||||||||||| ||||||||||| |||||||| | |||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  23990983 atactgattgcgggagaaggttttgtttcaactatatcaatataatattttttgttgttatatggaatcattatagtgcgtccggttgttaaacatgagt 23990884  T
Q  113 aactcctcaatgaagtttctaacctgcaaatggatcaaggggaagaaaaaagatattaattagggctatgtttggataaaaatctcattgaagcaattat 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |||||| ||||||||||| ||||||||||    
T  23990883 aactcctcaatgaagtttctaacctgcaaatg-atcaaggggaagaaaaaagatattaattagtgttatgcttggatgaaaatctcatttaagcaattat 23990785  T
Q  213 tgtataaacatttatcttctaagtgtttatgtataagcaatatataagctatcttgcagagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
     | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23990784 agcataaacatttatcttgtaagtgtttatgtataagcaatatataagctatcttgcagagagcttatggaaataagttggaaacaacttatagacatgt 23990685  T
Q  313 tacacattaagcttattctataagttcttttaaacagttttgcaagtgcttatacaagtagataagctcaaataagtcaattcaaataggcaatagatat 412  Q
     ||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23990684 cacaaattaagcttattctattagttcttttaaacagtttcgcaagtgcttatacaaatagataagctcaaataagtcaattcaaataggcaatagatat 23990585  T
Q  413 gacatttaattattcatacatggcttttggatcggagatttccaagaagtctttg 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23990584 gacatttaattattcatacatggcttttggatcggagatttccaagaagtctttg 23990530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 170 - 467
Target Start/End: Complemental strand, 23984132 - 23983835
Alignment:
Q  170 aattagggctatgtttggataaaaatctcattgaagcaattattgtataaacatttatcttctaagtgtttatgtataagcaatatataagctatcttgc 269  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23984132 aattagggctatgtttggataaaaatctcattgaagtaattattgcatatacatttatcttctaagtgtttatgtataagcaatagataagctatcttgc 23984033  T
Q  270 agagagcttatggaaataagttggaaacaacttatagacatgttacacattaagcttattctataagttcttttaaacagttttgcaagtgcttatacaa 369  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||||| | |||||||||||||||||||| |||||||| |||||||    
T  23984032 agagagcttatggaaataagttggaaaaaacttatagacatgtcataaattaagcttattgtttaagttcttttaaacagtttcgcaagtgcctatacaa 23983933  T
Q  370 gtagataagctcaaataagtcaattcaaataggcaatagatatgacatttaattattcatacatggcttttggatcggagatttccaagaagtctttg 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23983932 gtagataagctcaaataagtcaattcaaataggcaatagatatgaaatttaattattcatacatggcttttggatcggagatttccaagaagtctttg 23983835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 23984321 - 23984162
Alignment:
Q  13 atactgattgcaggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatgagt 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  23984321 atactgattgcgggagaaggtttcgtttcaaccacatcaatgtaatatttttttttgttatatggaatcattatggtgcggccggttgttaaacatgagt 23984222  T
Q  113 aactcctcaatgaagtttctaacctgcaaatggatcaaggggaagaaaaaagatattaatt 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23984221 aactcctcaatgaagtttctaacctgcaaat-gatcaaggggaagaaaaaagatattaatt 23984162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 23967389 - 23967233
Alignment:
Q  13 atactgattgcaggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatgagt 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23967389 atactgattgcgggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatgagt 23967290  T
Q  113 aactcctcaatgaagtttctaacctgcaaatggatcaaggggaagaaaaaagatatta 170  Q
    |||||||||||||||||||||||||||||||  || |||||||| || ||||||||||    
T  23967289 aactcctcaatgaagtttctaacctgcaaat-cataaaggggaaaaagaaagatatta 23967233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 467
Target Start/End: Complemental strand, 23966944 - 23966847
Alignment:
Q  371 tagataagctcaaataagtcaattcaaataggcaatagatatgacatttaa-ttattcatacatggcttttggatcggagatttccaagaagtctttg 467  Q
    ||||||| ||||||||| |||| |||| ||  || || |||||| |||| | ||||||||||||||||||||||| |||||| ||||| || ||||||    
T  23966944 tagataaactcaaataaatcaactcaagtaaacactaaatatgatattttagttattcatacatggcttttggattggagatatccaaaaaatctttg 23966847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 27123395 - 27123354
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  27123395 gagagcttatggaaataagttgaaaacaacttaaagacatgt 27123354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 35743310 - 35743350
Alignment:
Q  272 agagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  35743310 agagtttatggaaataagttggaaacaacttataaacatgt 35743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 679401 - 679440
Alignment:
Q  359 tgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  679401 tgcttataccagtagataaactcaaataagtcaattcaaa 679440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 6428124 - 6428167
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||||| | || |||||||||||||||||||||||||    
T  6428124 caagtgcttataccaatatataagctcaaataagtcaattcaaa 6428167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 399
Target Start/End: Original strand, 14172090 - 14172121
Alignment:
Q  368 aagtagataagctcaaataagtcaattcaaat 399  Q
    ||||||||||||||||||||||||||||||||    
T  14172090 aagtagataagctcaaataagtcaattcaaat 14172121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 50746081 - 50746124
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||    
T  50746081 caagtgcttatgcaagtagataaactcaaataagtcaatacaaa 50746124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 403
Target Start/End: Original strand, 20656159 - 20656193
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaataggc 403  Q
    ||||||||||||||||||| |||||||||||||||    
T  20656159 agtagataagctcaaataaatcaattcaaataggc 20656193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 23676972 - 23676934
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaat 393  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  23676972 caagtacttatacaagtagataagttcaaataagtcaat 23676934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 32421022 - 32420976
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaatag 401  Q
    ||||||||||| | ||||| ||||||||||||||||||| |||||||    
T  32421022 caagtgcttatgctagtaggtaagctcaaataagtcaatccaaatag 32420976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 403
Target Start/End: Complemental strand, 39691099 - 39691065
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaataggc 403  Q
    |||||||||||||||||||||||||||||| ||||    
T  39691099 agtagataagctcaaataagtcaattcaaacaggc 39691065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 398
Target Start/End: Original strand, 1133048 - 1133077
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||||||||||||||||||||||    
T  1133048 agtagataagctcaaataagtcaattcaaa 1133077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 2592368 - 2592314
Alignment:
Q  253 tatataagctatcttgcagagagcttatggaaataagttggaaacaacttatagaca 309  Q
    |||||||||||| |||  ||||||||||||||||||| || |||||||||| |||||    
T  2592368 tatataagctattttg--gagagcttatggaaataagctgaaaacaacttacagaca 2592314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 14011248 - 14011302
Alignment:
Q  256 ataagctatcttgcagagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||  ||||||||||||||||||| || ||||| |||| ||||||||    
T  14011248 ataagctatcttg--gagagcttatggaaataagctgaaaacagcttaaagacatgt 14011302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 23676803 - 23676840
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaat 393  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  23676803 aagtacttatacaagtagataagttcaaataagtcaat 23676840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 9680941 - 9680985
Alignment:
Q  346 acagttttgcaagtgcttatacaagtagataagctcaaataagtc 390  Q
    ||||| ||||||||| |||| || |||||||||||||||||||||    
T  9680941 acagtcttgcaagtgtttatgcatgtagataagctcaaataagtc 9680985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 46797120 - 46797152
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataa 387  Q
    |||||||||||||||||| ||||||||||||||    
T  46797120 caagtgcttatacaagtaaataagctcaaataa 46797152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 53315435 - 53315475
Alignment:
Q  358 gtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    |||||||||| ||| ||||||||||||||||||||| ||||    
T  53315435 gtgcttataccagtggataagctcaaataagtcaatccaaa 53315475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 12111072 - 12111121
Alignment:
Q  354 gcaagtgcttatacaagtagataagctcaaataagtcaattcaaataggc 403  Q
    |||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  12111072 gcaagtgcttatgctagtagataagctcaaataagtcaatccaaataggc 12111121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 30524036 - 30524091
Alignment:
Q  348 agttttgcaagtgcttatacaagtagataagctcaaataagtcaattcaaataggc 403  Q
    |||| ||||||||||||| ||| || ||||||||||||||||| ||||||||||||    
T  30524036 agttgtgcaagtgcttatgcaaatacataagctcaaataagtcgattcaaataggc 30524091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 397
Target Start/End: Original strand, 2455824 - 2455958
Alignment:
Q  256 ataagctatcttgcagagagcttatggaaataagttggaaacaacttatagacatgttacacattaagcttattctataagttcttttaaacagttttgc 355  Q
    |||||||||||||  |||||||||||||||||||||| ||| |  |||| | ||||| |     |||| |  ||| ||||| |||| |||||| | | ||    
T  2455824 ataagctatcttg--gagagcttatggaaataagttgaaaatagtttatgggcatgtca-----taagttgtttccataagctcttctaaacaatctcgc 2455916  T
Q  356 aagtgcttatacaagtagataagctcaaataagtcaattcaa 397  Q
    |||||||||| |  ||||||||||||||||||||||||||||    
T  2455917 aagtgcttatgccggtagataagctcaaataagtcaattcaa 2455958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 2460194 - 2460153
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  2460194 gagagcttatggaaataagttgaaaacaacttaaagacatgt 2460153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 7785787 - 7785746
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  7785787 gagagcttatggaaataagctgaaaacaacttatagacatgt 7785746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 281892 - 281850
Alignment:
Q  270 agagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||| ||||||||||| || |||||||||||||||||||    
T  281892 agagagctcatggaaataagctgaaaacaacttatagacatgt 281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 29296538 - 29296496
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||    
T  29296538 aagtgcatataccagtagataatctcaaataagtcaattcaaa 29296496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 31583709 - 31583747
Alignment:
Q  274 agcttatggaaataagttggaaacaacttatagacatgt 312  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  31583709 agcttatggaaataagttgaaaacaacttatggacatgt 31583747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 9668028 - 9667987
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||||||||||| ||||| ||||| |||||||    
T  9668028 gagagcttatggaaataagttgaaaacagcttatggacatgt 9667987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 27909681 - 27909640
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    ||||||||||||||||||| || ||||||||||| |||||||    
T  27909681 gagagcttatggaaataagctgaaaacaacttatggacatgt 27909640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 31338076 - 31338121
Alignment:
Q  348 agttttgcaagtgcttatacaagtagataagctcaaataagtcaat 393  Q
    ||||||| | |||||||| | |||||||||||||||||||||||||    
T  31338076 agttttgtacgtgcttatgctagtagataagctcaaataagtcaat 31338121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 34404116 - 34404157
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  34404116 gagagcttatagaaataagttgaaaacaacttatatacatgt 34404157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 2023426 - 2023386
Alignment:
Q  274 agcttatggaaataagttggaaacaacttatagacatgtta 314  Q
    |||||||| |||||||||| |||||||||||||||| ||||    
T  2023426 agcttatgaaaataagttgaaaacaacttatagacaagtta 2023386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 3217083 - 3217039
Alignment:
Q  348 agttttgcaagtgcttatacaagtagataagctcaaataagtcaa 392  Q
    ||||| |||| || |||| ||||||||||||||||||||||||||    
T  3217083 agtttcgcaaatgtttatgcaagtagataagctcaaataagtcaa 3217039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 400
Target Start/End: Original strand, 27984247 - 27984275
Alignment:
Q  372 agataagctcaaataagtcaattcaaata 400  Q
    |||||||||||||||||||||||||||||    
T  27984247 agataagctcaaataagtcaattcaaata 27984275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 39622034 - 39622091
Alignment:
Q  332 ataagttcttttaaacagttttgcaagtgcttatacaagtagataagctcaaataagt 389  Q
    ||||||||| | ||||||| | ||||||||||||||||||||||||| ||||||||||    
T  39622034 ataagttctctcaaacagtgtcgcaagtgcttatacaagtagataagttcaaataagt 39622091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 43529821 - 43529779
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    |||||||||||| | ||||||||||||||||||||||||||||    
T  43529821 aagtgcttataccaatagataagctcaaataagtcaattcaaa 43529779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 34652092 - 34652038
Alignment:
Q  256 ataagctatcttgcagagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||| |||||||    
T  34652092 ataagctatcttg--gagagcttatggaaataagttgaaaacagcttatggacatgt 34652038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 16867755 - 16867799
Alignment:
Q  258 aagctatcttgcagagagcttatggaaataagttggaaacaacttat 304  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||    
T  16867755 aagctatcttg--gagagcttatggaaataagttgaaaacaacttat 16867799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 37419631 - 37419588
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||    
T  37419631 caagtgcttatataagtagataaactcaaataagtcaatccaaa 37419588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 750841 - 750883
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    |||||||||||| | ||||||||||||||||||||||| ||||    
T  750841 aagtgcttataccaatagataagctcaaataagtcaatccaaa 750883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 35329872 - 35329829
Alignment:
Q  258 aagctatcttgcagagagcttatggaaataagttggaaacaactta 303  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||    
T  35329872 aagctatcttg--gagagcttatggaaataagctggaaacaactta 35329829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 1160783 - 1160742
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    ||||||||||||||||||  || |||||||||||||||||||    
T  1160783 gagagcttatggaaataaactgaaaacaacttatagacatgt 1160742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 1939375 - 1939334
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||||||||||| ||||| ||||| |||||||    
T  1939375 gagagcttatggaaataagttgaaaacagcttatggacatgt 1939334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 28803479 - 28803446
Alignment:
Q  370 gtagataagctcaaataagtcaattcaaataggc 403  Q
    |||||||||||||||||||||||| |||||||||    
T  28803479 gtagataagctcaaataagtcaatccaaataggc 28803446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 30552606 - 30552569
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaat 393  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  30552606 aagtgcttataccagtagataagctcaaatatgtcaat 30552569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 32615954 - 32615991
Alignment:
Q  277 ttatggaaataagttggaaacaacttatagacatgtta 314  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  32615954 ttatggaaataagttgaaaacaacttatggacatgtta 32615991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 6209622 - 6209578
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaattcaaata 400  Q
    |||||||||||||  ||||||||||||||||||| ||| ||||||    
T  6209622 aagtgcttatacagctagataagctcaaataagtaaatccaaata 6209578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 15370283 - 15370239
Alignment:
Q  359 tgcttatacaagtagataagctcaaataagtcaattcaaataggc 403  Q
    ||||||| | ||||||||||||||||||||||||| |||| ||||    
T  15370283 tgcttatgccagtagataagctcaaataagtcaatccaaacaggc 15370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 398
Target Start/End: Complemental strand, 18525190 - 18525162
Alignment:
Q  370 gtagataagctcaaataagtcaattcaaa 398  Q
    |||||||||||||||||||||||||||||    
T  18525190 gtagataagctcaaataagtcaattcaaa 18525162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 41057261 - 41057309
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaataggc 403  Q
    ||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  41057261 caagtgcttatgcatgtagataagctcaaataagccaattcaaataggc 41057309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 36189735 - 36189778
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  36189735 caagtgcttatactagtaaataagctcaaataagtcaattcaaa 36189778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 403
Target Start/End: Original strand, 45541654 - 45541725
Alignment:
Q  332 ataagttcttttaaacagttttgcaagtgcttatacaagtagataagctcaaataagtcaattcaaataggc 403  Q
    |||||||||| |||||||| || |||||| |||||| | || |||||||||||||||||||| |||| ||||    
T  45541654 ataagttcttctaaacagtcttacaagtgtttataccattaaataagctcaaataagtcaatccaaacaggc 45541725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 21862218 - 21862173
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgttaca 316  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||    
T  21862218 gagagcttatggaaataagctgaaaacaacttatggacatgttaca 21862173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 37273148 - 37273202
Alignment:
Q  256 ataagctatcttgcagagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||  |||| ||||||||||||||||| ||||||||||| |||||||    
T  37273148 ataagctatcttg--gagaacttatggaaataagttgaaaacaacttatggacatgt 37273202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 27796000 - 27795944
Alignment:
Q  332 ataagttcttttaaacagttttgcaagtgcttatacaagtagataagctcaaataag 388  Q
    ||||| ||| |||||||||||  ||||||||||| | ||||||||||||||||||||    
T  27796000 ataagctctcttaaacagtttcacaagtgcttatgccagtagataagctcaaataag 27795944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 29771852 - 29771906
Alignment:
Q  256 ataagctatcttgcagagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||    
T  29771852 ataagctatcttg-aga-agcttatggaaataagttgaaaacaacttatggacatgt 29771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 11253607 - 11253650
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||    
T  11253607 caagtgcttatgctagtagataatctcaaataagtcaattcaaa 11253650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 12985326 - 12985284
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||    
T  12985326 aagtgcttatgcaagtggataagctcaaataaatcaattcaaa 12985284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 3622367 - 3622416
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaataggca 404  Q
    ||||||||||||| |||||||||||| ||||||||| || |||| |||||    
T  3622367 caagtgcttatactagtagataagcttaaataagtcgatccaaacaggca 3622416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 25925812 - 25925869
Alignment:
Q  332 ataagttcttttaaacagttttgcaagtgcttatacaagtagataagctcaaataagt 389  Q
    ||||||||| | ||||||| || ||||||||||| | |||||||||| ||||||||||    
T  25925812 ataagttctctaaaacagtgttacaagtgcttatgccagtagataagttcaaataagt 25925869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 15304316 - 15304284
Alignment:
Q  371 tagataagctcaaataagtcaattcaaataggc 403  Q
    |||||||||||||||||||||||||||| ||||    
T  15304316 tagataagctcaaataagtcaattcaaacaggc 15304284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 43875571 - 43875615
Alignment:
Q  355 caagtgcttata-caagtagataagctcaaataagtcaattcaaa 398  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||    
T  43875571 caagtgcttataaccagtagataaactcaaataagtcaattcaaa 43875615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 7513665 - 7513708
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  7513665 caagtgcttatgccagtagataagctcaaataagtcaattcaaa 7513708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 403
Target Start/End: Original strand, 35267469 - 35267503
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaataggc 403  Q
    |||||||||||||||||||||||||||||||||||    
T  35267469 agtagataagctcaaataagtcaattcaaataggc 35267503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 753052 - 753118
Alignment:
Q  332 ataagttcttttaaacagttttgcaagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||| || |||| ||  | |||||||| |||||||||||||||||||||| ||| |||||    
T  753052 ataagttctttcaatcagtcttagaggtgcttatgcaagtagataagctcaaataagccaaatcaaa 753118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 1418526 - 1418568
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    |||||||||| | ||||||||||||||||||||||||| ||||    
T  1418526 aagtgcttatgccagtagataagctcaaataagtcaatccaaa 1418568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 2825200 - 2825162
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaat 393  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  2825200 caagtgcttatataagtagataagctcaaataaatcaat 2825162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 3019889 - 3019927
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaat 393  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  3019889 caagtacttatactagtagataagctcaaataagtcaat 3019927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 3468640 - 3468682
Alignment:
Q  270 agagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||    
T  3468640 agagaacttgtggaaataagttggaaacaacttatggacatgt 3468682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 402
Target Start/End: Complemental strand, 3836658 - 3836600
Alignment:
Q  344 aaacagttttgcaagtgcttatacaagtagataagctcaaataagtcaattcaaatagg 402  Q
    |||||||||  ||||||||||  | |||||||||||||||||||| |||| ||||||||    
T  3836658 aaacagtttcacaagtgcttaagccagtagataagctcaaataaggcaatccaaatagg 3836600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 12234933 - 12234891
Alignment:
Q  270 agagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||||||||| || ||||| |||||||||||||    
T  12234933 agagagcttatggaaataagctgaaaacagcttatagacatgt 12234891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 399
Target Start/End: Complemental strand, 44615078 - 44615024
Alignment:
Q  345 aacagttttgcaagtgcttatacaagtagataagctcaaataagtcaattcaaat 399  Q
    |||||||||||||||| |||| | ||||||||||||||| |||| |||| |||||    
T  44615078 aacagttttgcaagtggttatgctagtagataagctcaattaaggcaatccaaat 44615024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 398
Target Start/End: Complemental strand, 19302513 - 19302484
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||||||||||||||||||||||    
T  19302513 agtagataagctcaaataagtcaattcaaa 19302484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 22759269 - 22759306
Alignment:
Q  357 agtgcttatacaagtagataagctcaaataagtcaatt 394  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  22759269 agtgcttatgccagtagataagctcaaataagtcaatt 22759306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 398
Target Start/End: Original strand, 34036037 - 34036066
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||||||||||||||||||||||    
T  34036037 agtagataagctcaaataagtcaattcaaa 34036066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 47395141 - 47395100
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  47395141 gagagcctatggaaataagttgaaaacaacttataaacatgt 47395100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 398
Target Start/End: Complemental strand, 1431306 - 1431278
Alignment:
Q  370 gtagataagctcaaataagtcaattcaaa 398  Q
    |||||||||||||||||||||||||||||    
T  1431306 gtagataagctcaaataagtcaattcaaa 1431278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 6825028 - 6825072
Alignment:
Q  359 tgcttatacaagtagataagctcaaataagtcaattcaaataggc 403  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||||    
T  6825028 tgcttatagcagtagttaagctcaaataagtcaattcaaagaggc 6825072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 9210941 - 9210973
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaatag 401  Q
    ||||||||||||||||||||||||| |||||||    
T  9210941 agtagataagctcaaataagtcaatccaaatag 9210973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 25596047 - 25596092
Alignment:
Q  256 ataagctatcttgcagagagcttatggaaataagttggaaacaactta 303  Q
    |||||||||||||  ||||||||||| |||||||||| ||||||||||    
T  25596047 ataagctatcttg--gagagcttatgaaaataagttgaaaacaactta 25596092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 44289991 - 44289959
Alignment:
Q  371 tagataagctcaaataagtcaattcaaataggc 403  Q
    ||||||||||||||||||||||| |||||||||    
T  44289991 tagataagctcaaataagtcaatgcaaataggc 44289959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 388
Target Start/End: Original strand, 1113216 - 1113249
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataag 388  Q
    ||||||||||||||||||||||||||||||||||    
T  1113216 caagtgcttatacaagtagataagctcaaataag 1113249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 7008704 - 7008752
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaataggc 403  Q
    ||||||||||| | ||||||||| |||||||||||||||||||| ||||    
T  7008704 caagtgcttatgccagtagataaactcaaataagtcaattcaaacaggc 7008752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 394
Target Start/End: Complemental strand, 44865538 - 44865491
Alignment:
Q  347 cagttttgcaagtgcttatacaagtagataagctcaaataagtcaatt 394  Q
    ||||||| ||||||||||||| |||||||||||||| ||||| |||||    
T  44865538 cagttttacaagtgcttataccagtagataagctcagataagacaatt 44865491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 10727451 - 10727493
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||    
T  10727451 aagtacttatacaagtagataaactcaaataagtcaatccaaa 10727493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 398
Target Start/End: Complemental strand, 7712001 - 7711972
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||||||||||||||||||||||    
T  7712001 agtagataagctcaaataagtcaattcaaa 7711972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 403
Target Start/End: Original strand, 1821955 - 1821983
Alignment:
Q  375 taagctcaaataagtcaattcaaataggc 403  Q
    |||||||||||||||||||||||||||||    
T  1821955 taagctcaaataagtcaattcaaataggc 1821983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 403
Target Start/End: Original strand, 1856400 - 1856428
Alignment:
Q  375 taagctcaaataagtcaattcaaataggc 403  Q
    |||||||||||||||||||||||||||||    
T  1856400 taagctcaaataagtcaattcaaataggc 1856428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 6950350 - 6950390
Alignment:
Q  272 agagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||||||| || ||||||||||| |||||||    
T  6950350 agagcttatggaaataagctgaaaacaacttatcgacatgt 6950390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 7918501 - 7918456
Alignment:
Q  257 taagctatcttgcagagagcttatggaaataagttggaaacaacttat 304  Q
    ||||||||||||  |||||||||| ||||||||||||||||| |||||    
T  7918501 taagctatcttg--gagagcttattgaaataagttggaaacagcttat 7918456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 10939482 - 10939530
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaattcaaataggca 404  Q
    ||||||||||||| |||||||| ||||||||| ||||| ||| ||||||    
T  10939482 aagtgcttatacaggtagataaactcaaataattcaatccaagtaggca 10939530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 11376823 - 11376855
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaatag 401  Q
    |||||||||||||||||||| ||||||||||||    
T  11376823 agtagataagctcaaataagccaattcaaatag 11376855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 20186412 - 20186380
Alignment:
Q  371 tagataagctcaaataagtcaattcaaataggc 403  Q
    ||||||||||||||||||||||| |||||||||    
T  20186412 tagataagctcaaataagtcaatgcaaataggc 20186380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 20205479 - 20205447
Alignment:
Q  371 tagataagctcaaataagtcaattcaaataggc 403  Q
    ||||||||||||||||||||||| |||||||||    
T  20205479 tagataagctcaaataagtcaatgcaaataggc 20205447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 26284835 - 26284795
Alignment:
Q  274 agcttatggaaataagttggaaacaacttatagacatgtta 314  Q
    |||||||| ||||||| || |||||||||||||||||||||    
T  26284835 agcttatgaaaataagctgaaaacaacttatagacatgtta 26284795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 32840936 - 32840904
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaatag 401  Q
    ||||||||||||||| |||||||||||||||||    
T  32840936 agtagataagctcaagtaagtcaattcaaatag 32840904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 42597470 - 42597506
Alignment:
Q  276 cttatggaaataagttggaaacaacttatagacatgt 312  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  42597470 cttatggaaataagttgaaaacagcttatagacatgt 42597506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 43393724 - 43393688
Alignment:
Q  367 caagtagataagctcaaataagtcaattcaaataggc 403  Q
    |||||||||||||| |||||||||||| |||||||||    
T  43393724 caagtagataagcttaaataagtcaatccaaataggc 43393688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 2568741 - 2568802
Alignment:
Q  332 ataagttcttttaaacagttttgcaagtgcttatacaagtagataagctcaaataagtcaat 393  Q
    |||||||||| |||||||| |  |||||||||| || |||||||||||||||||||| ||||    
T  2568741 ataagttcttctaaacagtctctcaagtgcttacaccagtagataagctcaaataagacaat 2568802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 33533593 - 33533549
Alignment:
Q  258 aagctatcttgcagagagcttatggaaataagttggaaacaacttat 304  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||    
T  33533593 aagctatcttg--gagagcttatggaaataagttgaaaacaacttat 33533549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 10771852 - 10771806
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaatag 401  Q
    ||||||||||| | |||||||||||||||||||| |||| |||||||    
T  10771852 caagtgcttatgccagtagataagctcaaataagccaatccaaatag 10771806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 11297183 - 11297117
Alignment:
Q  332 ataagttcttttaaacagttttgcaagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    ||||| ||||| ||||||| || |||||| |||| | | |||||||||| |||||||||||||||||    
T  11297183 ataagctctttcaaacagtcttacaagtgtttatgccactagataagcttaaataagtcaattcaaa 11297117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 18704074 - 18704036
Alignment:
Q  276 cttatggaaataagttggaaacaacttatagacatgtta 314  Q
    |||||||||||||| || |||||||||||||||||||||    
T  18704074 cttatggaaataagctgaaaacaacttatagacatgtta 18704036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 38104913 - 38104866
Alignment:
Q  256 ataagctatcttgcagagagcttatggaaataagttggaaacaacttata 305  Q
    ||||||||||||  |||||||||||||||||||| || ||||||||||||    
T  38104913 ataagctatctt--agagagcttatggaaataagctgaaaacaacttata 38104866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 398
Target Start/End: Original strand, 28578965 - 28578994
Alignment:
Q  369 agtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||||||||||||||||||||||    
T  28578965 agtagataagctcaaataagtcaattcaaa 28578994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 33961804 - 33961837
Alignment:
Q  370 gtagataagctcaaataagtcaattcaaataggc 403  Q
    |||||||||||||||||| |||||||||||||||    
T  33961804 gtagataagctcaaataattcaattcaaataggc 33961837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 35551058 - 35551095
Alignment:
Q  356 aagtgcttatacaagtagataagctcaaataagtcaat 393  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  35551058 aagtgcttatgcaagtagataagttcaaataagtcaat 35551095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 5082931 - 5082979
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaataggc 403  Q
    |||||||||||| ||||||||||| ||||||||| |||| |||||||||    
T  5082931 caagtgcttataaaagtagataagttcaaataagccaatccaaataggc 5082979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 12564463 - 12564420
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaa 398  Q
    ||||||||||||  |||| |||||||||||||||||||||||||    
T  12564463 caagtgcttatatcagtatataagctcaaataagtcaattcaaa 12564420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 49125871 - 49125914
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgtta 314  Q
    ||||||||||||||| ||| || |||||||||||||||||||||    
T  49125871 gagagcttatggaaacaagctgaaaacaacttatagacatgtta 49125914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 4549260 - 4549298
Alignment:
Q  274 agcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||||| || |||||||||||||||||||    
T  4549260 agcttatggaaataagctgaaaacaacttatagacatgt 4549298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 32859911 - 32859865
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaatag 401  Q
    ||||| ||||| | ||||||||||||||| |||||||||||||||||    
T  32859911 caagtacttatgctagtagataagctcaagtaagtcaattcaaatag 32859865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 26916228 - 26916261
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttat 304  Q
    ||||||||||||||||||| ||||||||||||||    
T  26916228 gagagcttatggaaataagctggaaacaacttat 26916261  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 30259529 - 30259488
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||||||||||| |||||| |||| |||||||    
T  30259529 gagagcttatggaaataagttgaaaacaatttattgacatgt 30259488  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 33108665 - 33108632
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttat 304  Q
    |||||||||||||||||||||| |||||||||||    
T  33108665 gagagcttatggaaataagttgaaaacaacttat 33108632  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 35017603 - 35017644
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    |||||||||||||||||||||| ||| ||||||| |||||||    
T  35017603 gagagcttatggaaataagttgaaaataacttatggacatgt 35017644  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 44928182 - 44928125
Alignment:
Q  328 ttctataagttcttttaaacagttttgcaagtgcttatacaagtagataagctcaaat 385  Q
    ||||||||||||||  ||||| | || ||||||||||||| |||| ||||||||||||    
T  44928182 ttctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 44928125  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 23373277 - 23373229
Alignment:
Q  355 caagtgcttatacaagtagataagctcaaataagtcaattcaaataggc 403  Q
    ||||||||||||  |||||| ||| ||||||||||||||||||| ||||    
T  23373277 caagtgcttatatcagtagacaagttcaaataagtcaattcaaacaggc 23373229  T

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Target: scaffold0153 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 6537 - 6496
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    ||||||||||||||||||  || |||||||||||||||||||    
T  6537 gagagcttatggaaataaactgaaaacaacttatagacatgt 6496  T

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Target: scaffold0153; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 13557 - 13516
Alignment:
Q  271 gagagcttatggaaataagttggaaacaacttatagacatgt 312  Q
    ||||||||||||||||||  || |||||||||||||||||||    
T  13557 gagagcttatggaaataaactgaaaacaacttatagacatgt 13516  T

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