View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5578_low_4 (Length: 434)
Name: NF5578_low_4
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 31549839 - 31550250
Alignment:
| Q |
16 |
gtaaacttgttatgtattcttgtaaccgcttatacatttcattgagcgaggatatctgcagaaatccatcaatgaagacaataattaatattagtttaat |
115 |
Q |
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| T |
31549839 |
gtaaacttgttatgtattcttgtaaccgcttatacatttcattgagcgaggatatctgcagaaatccatcaatgaagacaataattaatattagtttaat |
31549938 |
T |
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| Q |
116 |
tcctgcaatgattggaagaagnnnnnnnnggtggaaaggagttcattgaactagaattatactgttattttaccttctgatttgcactttgaatctctcg |
215 |
Q |
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| T |
31549939 |
tcctgcaatgattggaagaagaaaaaaaaggtggaaaggagttcattgaactagaattatactgttattttaccttctgatttgcactttgaatctctcg |
31550038 |
T |
|
| Q |
216 |
ttcagcttttccgaggtcctcggaaagagtagtatgtgacctctcaatatccagccttgcttctctctctttagaaagagattccactgcagccttgtgt |
315 |
Q |
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| T |
31550039 |
ttcagcttttccgaggtcctcggaaagagtagtatgtgacctctcaatatccagccttgcttctctctctttagaaagagattccactgcagccttgtgt |
31550138 |
T |
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| Q |
316 |
ttacaaagatattttcatagcttattatgattgacatttgctttca-nnnnnnnnnnccaaaatttaaaaggcaaaaaagacttcaaaatatttcttacc |
414 |
Q |
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| T |
31550139 |
ttacaaagatattttcaaagcttattatgattgacatttcctttcatttttttttttccaaaatttaaaaggcaaaaaagacttcaaaatatttcttacc |
31550238 |
T |
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| Q |
415 |
gacttctctgct |
426 |
Q |
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| T |
31550239 |
gacttctctgct |
31550250 |
T |
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Back To:
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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 34649305 - 34649159
Alignment:
| Q |
180 |
ttattttaccttctgatttgcactttgaatctctcgttcagcttttccgaggtcctcggaaagagtagtatgtgacctctcaatatccagccttgcttct |
279 |
Q |
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||||| |||||||||||||||| ||| || ||| |||| |||| | ||||| || || || || || || || ||||| |||| || ||||| || ||| |
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| T |
34649305 |
ttattataccttctgatttgcagtttcaagctcacgttgagctctaccgagatcttctgatagtgttgtctgcgacctttcaaagtcaagcctagcctct |
34649206 |
T |
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| Q |
280 |
ctctctttagaaagagattccactgcagccttgtgtttacaaagata |
326 |
Q |
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| T |
34649205 |
ctttctttaataagagattccattgcagccttgtgtttcaaaagata |
34649159 |
T |
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