View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5578_low_6 (Length: 372)
Name: NF5578_low_6
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 46031914 - 46032277
Alignment:
| Q |
1 |
agcacataaaaa-tataaaaatcaaaatcaagagatcacatatatttcgtcnnnnnnnn-----gagatcacatatatacattttttaaaactaattact |
94 |
Q |
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| T |
46031914 |
agcacataaaaagtgtaaaaatcaaaatcaagagatcacatatatttcgtcaaaaaaaaaaaaagagatcacatatatacattttttaaaactaattact |
46032013 |
T |
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| Q |
95 |
aacatttgtcggaggtttaggacttacgctttcctcgaacatccaggaccttaaaaggttcgcttctaccttcccgaatgcacactccaattgaatttga |
194 |
Q |
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| T |
46032014 |
aacatttgtcggaggtttaggacttactctttcctcgaacatccaggaccttaaaaggttcgcttctaccttctcgaatgcacactccaattgaattaga |
46032113 |
T |
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| Q |
195 |
ttgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactcaatatctttgtcgatatcagcaactccaatatttctt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
46032114 |
ttgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactcaatctctttgtcgatatcagcaactcc---atttctt |
46032210 |
T |
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| Q |
295 |
agtgtaatgaatttgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtat |
361 |
Q |
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| T |
46032211 |
agtgtaatgaattcgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtat |
46032277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 69 - 361
Target Start/End: Original strand, 46019314 - 46019605
Alignment:
| Q |
69 |
atatacattttttaaa-actaattactaacatttgtcggaggtttaggac-ttacgctttcctcgaacatccaggaccttaaaaggttcgcttctacctt |
166 |
Q |
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| T |
46019314 |
atatacattttttaacgattaattactaaagtttgtcggagatttaggaccttaccctttcctcgaacatccaggaccttaaaaggttcgcttctacctt |
46019413 |
T |
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| Q |
167 |
cccgaatgcacactccaattgaatttgattgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactcaatatcttt |
266 |
Q |
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| T |
46019414 |
cccgaatgcacgctccaattgaattagattgaactattttaacccctagccgaaattgaccggttcttctctttgatatatctgtaaactcaatctctat |
46019513 |
T |
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| Q |
267 |
gtcgatatcagcaactccaatatttcttagtgtaatgaatttgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtat |
361 |
Q |
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| T |
46019514 |
gttgatatcagcaactcc---atttcttagtgtaatgattttatttcctttcagtagttgtccttttccaactcttggaggtacaatttgagtat |
46019605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 46019278 - 46019318
Alignment:
| Q |
3 |
cacataaaaatataaaaatcaaaatcaagagatcacatata |
43 |
Q |
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| T |
46019278 |
cacataaaaatgtaaaaatcaaaatcaagatatcccatata |
46019318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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