View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5578_low_7 (Length: 327)
Name: NF5578_low_7
Description: NF5578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5578_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 24 - 318
Target Start/End: Original strand, 627357 - 627668
Alignment:
| Q |
24 |
acttcctccttttcttcccatcagcaactgaaggattattgcaatatcaaaaaccttataataactaattaactaaaactatgacataaatatat----- |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
627357 |
acttcctccttttcttcccatcagcaactgaaggattattacaatatcaaaaaccttataataacaaattaactaaaactatgacataaatatatatgta |
627456 |
T |
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| Q |
119 |
-gtatgcatgtactaattaaggtacaatacaaacctgatgagagaaatgttactgcttaatttggatataacttcacaacatattgtgcatggagttttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
627457 |
tgtatgcatgtactaattaaggtacaatacaaacctgatgagagaaatgttactgcttaatttggatataacttcacaacatattgtgcatggagttttt |
627556 |
T |
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| Q |
218 |
gagattgatagaaaaggttattgtggatgaagaatt-----------gagagaaaagttagagagtgtgaaaagagtaagtgcaagaccgcgcaagtgtt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
627557 |
gagattgatagaaaaggttattgtggatgaagaattgagagaaagaagagagaaaagttagagagtgtgaaaagagtaagtgcaagaccgcgcaagtgtt |
627656 |
T |
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| Q |
307 |
ggttagtattat |
318 |
Q |
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|||| ||||||| |
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| T |
627657 |
ggttggtattat |
627668 |
T |
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