View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5579-Insertion-2 (Length: 1031)
Name: NF5579-Insertion-2
Description: NF5579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5579-Insertion-2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 450 - 1030
Target Start/End: Complemental strand, 31460594 - 31460020
Alignment:
| Q |
450 |
ataaaaaataaattaggtaagttcatagttcattaagttgagaaaaagtctcaagactctaggattattccactaagaatccaactcagattcttcagaa |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31460594 |
ataaaaaataaattaggtaagttcatagttcattaagttgagaaaaagtctcaagactctaggattattccactaagaatccaactcagattctccagaa |
31460495 |
T |
|
| Q |
550 |
ctaagagttgttttgtttgattagcagctcttttttaataaattttgttttattaatagttagtagtaaccaactattaacattaacatattacatgatg |
649 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31460494 |
ctaagagctgttttgtttgattagcagcttttttttaataaattttgttttattaatagtgagtagtaaccaactattaacattaacatattacatgatg |
31460395 |
T |
|
| Q |
650 |
aaggaattgataacctaggtttgtctagttgctaaagaacagctcatactccgtaagggtttgagttcaactctcactcattgagtaaggatctcgttga |
749 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31460394 |
aaggaattgataacctaggtttgtctagttgctaaagaacagctcatactccgttagggtttgagttcaactctcactcattgagtaaggatctcgttga |
31460295 |
T |
|
| Q |
750 |
tacgtaatcaacgttctttgagtcttgaggtctgtatgaccctgattagctgagactcaactcagctaaactttaccacatcaaaaatacatgaag---- |
845 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31460294 |
tacgtaatcaacgttctttgagtcttgaggtctgtatgaccctg--------------aactcagctaaactttaccacatcaaaaatacatgaaggaat |
31460209 |
T |
|
| Q |
846 |
gaattagtgttaattataatacttttatttggtaacaataatgatttattatggtactaatatgtaatgttatggatgcaggaggtcacataaacccagc |
945 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31460208 |
gaattagtgttaattataatacttttatttggtaacaataatgatttattatggtactaatatgtaatgttatggatgcagggggtcacataaacccagc |
31460109 |
T |
|
| Q |
946 |
agtgacattcggtttgttcttggcaaggaaattgtcattgacca-ggctgtg-tctacatgg-tatgc-aacccttggtgctatctgtg |
1030 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||| |
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|
| T |
31460108 |
agtgacattcggtttgttcttggcaaggaaattgtcattgaccagggctgtgttctacatggttatgcaaacccttggtgctatctgtg |
31460020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 31461036 - 31460657
Alignment:
| Q |
8 |
agagacaaccaattggtattgcagctcagagccatgatgatggcaaggactacaaggaaccaccaccagctccattgtttgagccttctgaactcacttc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
31461036 |
agagacaaccaattggtattgcagctcagagccatgatgatggcaaggactacaaggaaccaccaccagcaccattgtttgagccttctgaactcacttc |
31460937 |
T |
|
| Q |
108 |
atggtctttctacagagctgggatagctgagtttgtagccacttttctgttcttgtacatcactatcttgactgttatgggtgttaacaggtctgagtct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31460936 |
atggtctttctacagagctgggatagctgagtttgtagccacttttctgttcttgtacatcactatcttgactgttatgggtgttaacaggtctgagtct |
31460837 |
T |
|
| Q |
208 |
aagtgtaaaactgttggtattcaaggaattgcttggtcttttggtggcatgatctttgctcttgtttactgtaccgctggtatctctggtatgtatcttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31460836 |
aagtgtaaaactgttggtattcaaggaattgcttggtcttttggtggcatgatctttgctcttgtttactgtaccgctggtatctctggtatgtatcttt |
31460737 |
T |
|
| Q |
308 |
aaatctagtgaatttctctattaaccatgaatttagtaacaaaatttagtttattttttccaattatttctgtaactctg |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31460736 |
aaatctagtgaatttctctattaaccatgaatttagtaacaaaatttagtttattttttccaattatttctgtaactctg |
31460657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 3e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 35231133 - 35230844
Alignment:
| Q |
10 |
agacaaccaattggtattgcagctcagagccatgatgatggcaaggactacaaggaaccaccaccagctccattgtttgagccttctgaactcacttcat |
109 |
Q |
| |
|
||||||||| |||| || |||||||| ||||| ||||| |||||||| | || ||||||||||| || ||||||||||| |||||||||||||||| |
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|
| T |
35231133 |
agacaaccacttgggatagcagctcaaagccaagatgaccctaaggactatcaagagccaccaccagcacctttgtttgagccatctgaactcacttcat |
35231034 |
T |
|
| Q |
110 |
ggtctttctacagagctgggatagctgagtttgtagccacttttctgttcttgtacatcactatcttgactgttatgggtgttaacaggtctgagtctaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || ||||| || || | || |||||| | |||||||||||||||||| || |||| ||||| |
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|
| T |
35231033 |
ggtctttctacagagctgggatagctgagttcgttgctactttcctttttctttatatcactgttttgactgttatgggtgttgttagagctgattctaa |
35230934 |
T |
|
| Q |
210 |
gtgtaaaactgttggtattcaaggaattgcttggtcttttggtggcatgatctttgctcttgtttactgtaccgctggtatctctggtat |
299 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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|
| T |
35230933 |
gtgtaagactgtgggtattcaaggaattgcttgggcttttggtggcatgatctttgctcttgtttactgtactgctggaatctcaggtat |
35230844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 52 - 272
Target Start/End: Complemental strand, 2650330 - 2650110
Alignment:
| Q |
52 |
aaggactacaaggaaccaccaccagctccattgtttgagccttctgaactcacttcatggtctttctacagagctgggatagctgagtttgtagccactt |
151 |
Q |
| |
|
||||||||||| ||| |||||||||| || ||||||||||| || | | |||||||| || || ||||||||||| ||||| ||||| || |||| |
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|
| T |
2650330 |
aaggactacaaagaagcaccaccagcacctttgtttgagccaggagagttgaagtcatggtcattttatagagctgggattgctgaatttgttgcaactt |
2650231 |
T |
|
| Q |
152 |
ttctgttcttgtacatcactatcttgactgttatgggtgttaacaggtctgagtctaagtgtaaaactgttggtattcaaggaattgcttggtcttttgg |
251 |
Q |
| |
|
| ||||| | ||||||||| |||||||||| |||||||| || ||||| ||||| ||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
2650230 |
tcttgttcctttacatcactgtcttgactgtgatgggtgtgaataggtcaccctctaaatgtgcctctgttggtattcaaggaattgcttgggcttttgg |
2650131 |
T |
|
| Q |
252 |
tggcatgatctttgctcttgt |
272 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
2650130 |
tggtatgatctttgctcttgt |
2650110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 920 - 987
Target Start/End: Complemental strand, 35230425 - 35230358
Alignment:
| Q |
920 |
gatgcaggaggtcacataaacccagcagtgacattcggtttgttcttggcaaggaaattgtcattgac |
987 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||| || | || ||||||||||||||||||||||| |
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|
| T |
35230425 |
gatgcaggtggtcacataaatccagcagtcacatttgggctatttttggcaaggaaattgtcattgac |
35230358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 50 - 287
Target Start/End: Original strand, 41036786 - 41037023
Alignment:
| Q |
50 |
gcaaggactacaaggaaccaccaccagctccattgtttgagccttctgaactcacttcatggtctttctacagagctgggatagctgagtttgtagccac |
149 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||| || |||||||| |||||||| |
|
|
| T |
41036786 |
gcaaagactacaaagagccaccaccagctccattgtttgagcctggtgagctcaagtcatggtctttttacagagctggaattgctgagttcgtagccac |
41036885 |
T |
|
| Q |
150 |
ttttctgttcttgtacatcactatcttgactgttatgggtgttaacaggtctgagtctaagtgtaaaactgttggtattcaaggaattgcttggtctttt |
249 |
Q |
| |
|
||| ||||| | |||||||| || |||||||| |||||||| ||||| || || || ||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
41036886 |
tttcttgttcctttacatcaccattttgactgtcatgggtgtcaacagatcaacctccaaatgttcctctgttggcattcaaggtattgcttggtctttt |
41036985 |
T |
|
| Q |
250 |
ggtggcatgatctttgctcttgtttactgtaccgctgg |
287 |
Q |
| |
|
|| || ||||||||||| ||||| ||||| || ||||| |
|
|
| T |
41036986 |
gggggtatgatctttgcccttgtctactgcactgctgg |
41037023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 4483527 - 4483449
Alignment:
| Q |
220 |
gttggtattcaaggaattgcttggtcttttggtggcatgatctttgctcttgtttactgtaccgctggtatctctggta |
298 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
4483527 |
gttggtgttcagggaattgcttgggcttttggtggaatgatttttgctcttgtttattgtactgctggtatctcaggta |
4483449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 21793237 - 21793302
Alignment:
| Q |
235 |
attgcttggtcttttggtggcatgatctttgctcttgtttactgtaccgctggtatctctggtatg |
300 |
Q |
| |
|
||||||||| |||||||||||||||| || |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
21793237 |
attgcttgggcttttggtggcatgattttcattcttgtttactgcaccgccggtatctctggtatg |
21793302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 40208099 - 40208033
Alignment:
| Q |
232 |
ggaattgcttggtcttttggtggcatgatctttgctcttgtttactgtaccgctggtatctctggta |
298 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
40208099 |
ggaattgcttgggcttttggtggtatgatcttcatccttgtttactgcaccgccggtatctctggta |
40208033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 40208243 - 40208181
Alignment:
| Q |
109 |
tggtctttctacagagctgggatagctgagtttgtagccacttttctgttcttgtacatcact |
171 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| ||| |||| ||| | ||||||||| |
|
|
| T |
40208243 |
tggtctttgtacagagctgtcatagctgagtttgtagcaactcttctcttcctatacatcact |
40208181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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