View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5579-Insertion-3 (Length: 335)
Name: NF5579-Insertion-3
Description: NF5579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5579-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 320
Target Start/End: Original strand, 38725219 - 38725527
Alignment:
| Q |
7 |
agccagtgctcgacaaaagttagaagatnnnnnnncagaattagagaagcactctttggtgaagaaacctgacatgaaatctgtgcattcaacagaatca |
106 |
Q |
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| T |
38725219 |
agccagtgctcaacaaaagttagaagataaaaaaacagaattagagaagcactctttggtgaagaaacctgacatgaaatctgtgcattcaacagaatca |
38725318 |
T |
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| Q |
107 |
actacatggagtaaagatgatgtatcaggcgagtttaccaaaatgagattggtatgtcaaaggccattgccaaaatcttttctttgcctgggttatgagg |
206 |
Q |
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| T |
38725319 |
actacatggagtaaagatgatgtatcaggcgagtttaccaaaatgagattggtatgtcaaaggccattgccaaaatcttttctttgcctgggttatgagg |
38725418 |
T |
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| Q |
207 |
gatggaaagtgaagtgattaatttgcatcctatctaggtagaatgtagaatatagatgaaataaatgatatattgctattttagatttcattccatgtgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38725419 |
gatggaaagtgaagtgattaatttgcatcctatctaggtagaatgtagaatatagatgaaataaatgatatattgctattttagattt-----catgtgt |
38725513 |
T |
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| Q |
307 |
gtgtaacagtgtta |
320 |
Q |
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|||||||||||||| |
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| T |
38725514 |
gtgtaacagtgtta |
38725527 |
T |
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