View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5579-Insertion-4 (Length: 230)
Name: NF5579-Insertion-4
Description: NF5579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5579-Insertion-4 |
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| [»] chr3 (8 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 23037042 - 23037265
Alignment:
| Q |
7 |
agttaaaaccccctgcaacctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23037042 |
agttaaaaccccctgcaacctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgt |
23037141 |
T |
|
| Q |
107 |
gtacatagttgaaagtacagcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23037142 |
gtacatagttgaaagtacagcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggt |
23037241 |
T |
|
| Q |
207 |
tggtatgagttgacccttttcagg |
230 |
Q |
| |
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||||||||||| |||||||||||| |
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| T |
23037242 |
tggtatgagttaacccttttcagg |
23037265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 23146798 - 23147013
Alignment:
| Q |
11 |
aaaaccccctgcaacctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtac |
110 |
Q |
| |
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||||||||||||||||||||| | |||| |||||| |||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
23146798 |
aaaaccccctgcaacctttattgattgttttaccactgatataaatttatcttggtctttgcattcattgccaaaagcagccctcgaaacaattgtgtat |
23146897 |
T |
|
| Q |
111 |
atagttgaaagtacagcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggt |
210 |
Q |
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|| | ||| |||||||||||| || ||||||||| |||| |||||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||| |
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| T |
23146898 |
attgacgaacgtacagcttcagtaatgttgattggaattccgacctgtgaggcaatccatttggcaagattgaaaaacacttcttctctaattggttggt |
23146997 |
T |
|
| Q |
211 |
atgagttgaccctttt |
226 |
Q |
| |
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|||||||||||||||| |
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| T |
23146998 |
atgagttgaccctttt |
23147013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 23039923 - 23040138
Alignment:
| Q |
11 |
aaaaccccctgcaacctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtac |
110 |
Q |
| |
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||||||||| ||||||||||| | |||| |||||| |||||||||||| |||||||| ||||||||||||||||| |||| ||| |||||||||||||| |
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| T |
23039923 |
aaaacccccggcaacctttattgattgttttaccactgatataaatttgtcttggtccttgcattcattgccaaaggcagcccttgaaacaattgtgtat |
23040022 |
T |
|
| Q |
111 |
atagttgaaagtacagcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggt |
210 |
Q |
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|| | ||| |||||||||||| || ||||||||| |||| | | |||||||||||||||||||||||||||||| ||||||||||||||| ||||| | |
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| T |
23040023 |
attgaagaacgtacagcttcagtaatgttgattggaattccgtcccgtgaagcaatccatttgacaagattggaaaacacttcttctctaattggttgat |
23040122 |
T |
|
| Q |
211 |
atgagttgaccctttt |
226 |
Q |
| |
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||||||| |||||||| |
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| T |
23040123 |
atgagttaaccctttt |
23040138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 23018161 - 23018347
Alignment:
| Q |
40 |
ttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtacagcttcagagatatt |
139 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||| || | |||||||||||||||| || || |
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| T |
23018161 |
ttaccactgatataaatttttcttggtctttgcatttattgccaaaggcagcccttgaaacaattgtgtatatcgaagaaagtacagcttcagtgaagtt |
23018260 |
T |
|
| Q |
140 |
gattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgaccctttt |
226 |
Q |
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|||||| | ||| |||| |||||||||| | |||| ||||||||| | || ||||||||||||||||||||||||||||||||||| |
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| T |
23018261 |
gattggcgatccattctctgaagcaatcgacttgataagattggagaaaacctcttctctaatcggttggtatgagttgaccctttt |
23018347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 23033725 - 23033944
Alignment:
| Q |
7 |
agttaaaaccccctgcaacctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgt |
106 |
Q |
| |
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|||||||||| ||||||| ||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||| || | ||| ||||||||||| |
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| T |
23033725 |
agttaaaacctcctgcaatctttagtgtttgttttaccaccgatataaatttttcttggtctctgcattcattgccaaaggcggcccttgaaacaattgt |
23033824 |
T |
|
| Q |
107 |
gtacatagttgaaagtacagcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggt |
206 |
Q |
| |
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||| || | |||| ||||||||||| | |||| || | ||| ||||| ||||||||| ||||||||||||||| | || ||||||| || ||| |
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| T |
23033825 |
gtatattgaagaaattacagcttcagtaaggttgaagggtgatccattctgcgaagcaatcgttttgacaagattggagaaaacctcttctcgtattggt |
23033924 |
T |
|
| Q |
207 |
tggtatgagttgaccctttt |
226 |
Q |
| |
|
||||| |||||||||||||| |
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| T |
23033925 |
tggtacgagttgaccctttt |
23033944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 23025185 - 23025358
Alignment:
| Q |
47 |
tgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtacagcttcagagatattgattgga |
146 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||| ||||| | |||||||| ||||| || | ||||||||||||| || || ||||| || |
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| T |
23025185 |
tgatataaatttttcttggtctttgaatttcttgccaaaggcagattttgaaacaatagtgtatattgaagaaagtacagcttgagtgaggttgatgggt |
23025284 |
T |
|
| Q |
147 |
gttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgac |
220 |
Q |
| |
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| ||||| || |||||||||||||||||||||||||| | | |||||||||||||||| ||||| |||||||| |
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| T |
23025285 |
gatccttccttcgaagcaatccatttgacaagattggagaactcttcttctctaatcggctggtaggagttgac |
23025358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 23141182 - 23141355
Alignment:
| Q |
47 |
tgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtacagcttcagagatattgattgga |
146 |
Q |
| |
|
|||||||||||| |||||||| ||||| | |||||||| ||||| | |||| ||| ||||| || | ||||||||||||| || || ||||| | |
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| T |
23141182 |
tgatataaatttgtcttggtcgttgcacttcttgccaaatgcagattttgaaagaatagtgtatattgaagaaagtacagcttgagtgaggttgatggat |
23141281 |
T |
|
| Q |
147 |
gttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgac |
220 |
Q |
| |
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| |||||||| ||||| |||||||||||||||||||| | | ||||||||||||| || |||||||||||||| |
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| T |
23141282 |
gatcctttctttgaagttatccatttgacaagattggagaactcttcttctctaattggctggtatgagttgac |
23141355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 23149792 - 23149965
Alignment:
| Q |
47 |
tgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtacagcttcagagatattgattgga |
146 |
Q |
| |
|
|||||||||||| |||||||||||| | | |||||||| |||| | |||||||| ||||| || | |||| |||||||| || || ||||| || |
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| T |
23149792 |
tgatataaatttgtcttggtctttgaacttcttgccaaaggcagcttttgaaacaatggtgtatattatagaaattacagcttgagtgaggttgatgggt |
23149891 |
T |
|
| Q |
147 |
gttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgac |
220 |
Q |
| |
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| ||||| || ||||||||||||||||||||||| || ||| ||||||||||||| || ||||| |||||||| |
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|
| T |
23149892 |
gatccttccttcgaagcaatccatttgacaagattagagagctcttcttctctaattggctggtaagagttgac |
23149965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 5640 - 5425
Alignment:
| Q |
11 |
aaaaccccctgcaacctttatggtttgtcttaccaatgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtac |
110 |
Q |
| |
|
|||||| ||||||| | |||| |||||| |||||| ||||||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||| |
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| T |
5640 |
aaaacctcctgcaatccttattgtttgttttaccactgatataaatttttcttggtctttgcatttattgccaaaggctgccctcgaaacaattgtgtat |
5541 |
T |
|
| Q |
111 |
atagttgaaagtacagcttcagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggt |
210 |
Q |
| |
|
|| | |||| || ||||| | || ||||||||| | ||| |||| ||||||||||||||||||||||| || || || |||||||| || ||||||| |
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|
| T |
5540 |
attgaagaaattaaagcttttgtgagattgattggtgatccgttctctgaagcaatccatttgacaagatcagagagaacatcttctcttattggttggt |
5441 |
T |
|
| Q |
211 |
atgagttgaccctttt |
226 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
5440 |
aggagttgaccctttt |
5425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 226
Target Start/End: Original strand, 21780849 - 21781028
Alignment:
| Q |
47 |
tgatataaatttttcttggtctttgcattcattgccaaacgcagacctcgaaacaattgtgtacatagttgaaagtacagcttcagagatattgattgga |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| || |||||||||||||| ||||| | | ||| |||||||| || || |||||||| |
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| T |
21780849 |
tgatataaatttttcttggtctttgcatttatttccaaaggcggacctcgaaacaatagtgtatactgaagaagttacagcttgagtgaggttgattggc |
21780948 |
T |
|
| Q |
147 |
gttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgaccctttt |
226 |
Q |
| |
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| ||| ||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||| |
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| T |
21780949 |
gatccattctgtgaaacaatccatctgacaagattggagagcacctcttctctaatcggttggtgtgagttgactctttt |
21781028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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