View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5579_high_3 (Length: 734)
Name: NF5579_high_3
Description: NF5579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5579_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 218 - 716
Target Start/End: Complemental strand, 32158724 - 32158226
Alignment:
| Q |
218 |
cgtaagttgtcatgtaaatgatcgttcaaataacacaccttttaaccatatttactcccacaatgttgttcaagaagaaggtacaatcttgggacagaga |
317 |
Q |
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| T |
32158724 |
cgtaagttgtcatgcaaatgatcgttcaaataacacaccttttaaccatatttactcccacaatgttgttcaagaagaaggtacaatcttgggacagaga |
32158625 |
T |
|
| Q |
318 |
cgtaacacgacatacaggagaatgtgtgcccatgtccaaaactaccggcaatgttattgccaaactggccacgaggaaacataaagaatctttttaaaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158624 |
cgtaacacgacatacaggagaatgtgtgcccatgtccaaaactaccggcaatgttattgccaaactggccacgaggaaacataaagaatctttttaaaat |
32158525 |
T |
|
| Q |
418 |
catacaagacaaacattactacatcagtgtctgtatatactttggaacatgttggagtaggttgtgttcatattatgaaataaaaactttgagtttgaca |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32158524 |
catacaagacaaacattactacatcagtgtctgtatatactttggaacatgttggagtaggttgtgttcatattatgaaataacaactttgagtttgaca |
32158425 |
T |
|
| Q |
518 |
ttccattttatatagcactaactaacacctgttcatataatatgccaatgtcagagaaaccagtgaaatactatgtggtgagtttattttgtttgaatct |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158424 |
ttccattttatatagcactaactaacacctgttcatataatatgccaatgtcagagaaaccagtgaaatactatgtggtgagtttattttgtttgaatct |
32158325 |
T |
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| Q |
618 |
gaacttagttattgttgatgaaatatagttaataatgctaatgttattacacaggtggatgcttttactgagttggcgttcaaggggaaccctgcagca |
716 |
Q |
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| T |
32158324 |
gaacttagttattgttgatgaaatatagttaataatgctaatgttattacacaggtggatgcttttactgagttggcgttcaaggggaaccctgcagca |
32158226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 32158935 - 32158807
Alignment:
| Q |
7 |
ggagcagagagcttgaggcaaagccagagggtagggcacactactgtactcataagtcaaacaaataaataattcccttgtttaagttaaaaatagagaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32158935 |
ggagcagagagcttgaggcaaagccagagggtagggcacacttctgtactcataagtcaaacaaataaataattcccttgtttaagttaaaagtagagaa |
32158836 |
T |
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| Q |
107 |
ataatatttgtacatttaatttgtgataa |
135 |
Q |
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| T |
32158835 |
ataatatttgtacatttaatctgtgataa |
32158807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 716
Target Start/End: Original strand, 44288205 - 44288252
Alignment:
| Q |
669 |
caggtggatgcttttactgagttggcgttcaaggggaaccctgcagca |
716 |
Q |
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| T |
44288205 |
caggtggatgctttcactgagtcagcgttcaagggaaaccctgcagca |
44288252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 6884901 - 6884943
Alignment:
| Q |
93 |
ttaaaaatagagaaataatatttgtacatttaatttgtgataa |
135 |
Q |
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| T |
6884901 |
ttaaaaatagagaaatgatatttgtacaactaatttgtgataa |
6884943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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