View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5579_high_4 (Length: 597)
Name: NF5579_high_4
Description: NF5579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5579_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 316 - 576
Target Start/End: Original strand, 8931612 - 8931879
Alignment:
| Q |
316 |
ggatggcacgccagcttttgagatgagaaagcgattcagcactaaggtactctacaaggcttgctgttgcatttctcctgcttaagctttatcagcatac |
415 |
Q |
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| T |
8931612 |
ggatggcacgccagcttttgagatgagaaagcgattcagcactaaggtactctacaaggcttgctgttgcatttctcctgcttaagctttatcagcatac |
8931711 |
T |
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| Q |
416 |
aacacaacttaaa-------gagaaacccgcacacgctaaacattagatggaacacatgcgagtacacaccaaaaagagataaaaataacgcacagagtg |
508 |
Q |
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| T |
8931712 |
aagacaacttaaaatatcaggagaaacccgcacacgccaaacattagatggaacacatgcgagtacacaccgaaaaaagataaaaataacgcacagattg |
8931811 |
T |
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| Q |
509 |
aacgtggttcggcacttcatacctgctttcatgaaaacatctcagcataaagtatgcactgtaacctc |
576 |
Q |
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| T |
8931812 |
aacgtggttcggcacctcatacctgcattcatgaaaacatctcagcataaagtatgcactgtaacctc |
8931879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 8931293 - 8931526
Alignment:
| Q |
3 |
agagaaccacgacgtttccccttgtaacaaaataaacatggaagatgatttttcttatgtacnnnnnnnn--gtaagagcatatatttttcttatctact |
100 |
Q |
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| T |
8931293 |
agagaaccacgacgtttccccttataacaaaatatacatggaagatgatttttgttatgtacttttttttttgtaagagcatatatttttcttatctact |
8931392 |
T |
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| Q |
101 |
----taaatcatgtgagtgatgataaaatcaacaatcatgcatggctattttttcacattgcgacaaattaaccagtgtttatcaatcatcatactaaat |
196 |
Q |
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| T |
8931393 |
tacttaaatcatgtgagtgatgataaaatcaacaatcatgcatggctattttttcacattgcgacaaattaaccagtgtttatcaatcatcatactaaat |
8931492 |
T |
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| Q |
197 |
gcttctccactcaacgagagaaacaattcattcc |
230 |
Q |
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| T |
8931493 |
gcttctccactcaacgagagaaacaattcattcc |
8931526 |
T |
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