View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5579_high_5 (Length: 464)
Name: NF5579_high_5
Description: NF5579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5579_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 20 - 456
Target Start/End: Original strand, 33454792 - 33455228
Alignment:
| Q |
20 |
agtattgctaatgcatgttatgcataaccagagaaccaccttataccgcaattaaagttttaattgatggaaataagaacaagataaaacgtttccacat |
119 |
Q |
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| T |
33454792 |
agtattgctaatgcatgttatgcataaccagagaaccaccttataccgcaattaaagttttaattgatggaaataagaacaagataaaacgtttccacat |
33454891 |
T |
|
| Q |
120 |
tgcatcttcacaattttaacttgatcaaggaatatgtagacaaccaaagcaatcagtgtgcattgtataataccttccttaaaaacctatttatgcattt |
219 |
Q |
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| T |
33454892 |
tgcatcttcacaatttttacttgatcaaggaatatgtagacaaccaaagcaatatgtgtgcattgtataataccttccttaaaaacctatttatgcattt |
33454991 |
T |
|
| Q |
220 |
taactctcttgcttaaatgaaaatcttagaggcctaatgatgtactgacaatatcataaatgaaagcagaactcgatcaaaaagtatcaacgacattttc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33454992 |
taactctcttgcttaaatgaaaatcttagaggcctaatgatgtactgacaatatcataaatgaaagcaggactcgatcaaaaagtatcaacgacattttc |
33455091 |
T |
|
| Q |
320 |
ttcagtcttacaaatttcctttgtaagacctctcgtgttaagtcaaaactgaacctgcttctttagagtaaatatgacattactccgaatagaacctttt |
419 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33455092 |
ttcagtcttacaaattttctttgtaagacctctcgtgttaagtcaaaactgaacctgcttctttagagtaaatatgacattactccgaatagaacctttt |
33455191 |
T |
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| Q |
420 |
gtaatttatactgcatgcctatactcacagtattatc |
456 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
33455192 |
gtaatttatactgcatgcctatactcacagtactatc |
33455228 |
T |
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