View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5579_high_6 (Length: 423)
Name: NF5579_high_6
Description: NF5579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5579_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 324
Target Start/End: Original strand, 43384085 - 43384390
Alignment:
| Q |
15 |
atcaccgttgctcatgtatgtttcattttatttgcatcctaattctaattacccctcttatttcatttctcttagtattctatttttgtttttattaact |
114 |
Q |
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| T |
43384085 |
atcaccgttgctcatgtttgtttcattttatttgcaccctaattctaattacctctcttatttcatttctcttagtattctatttttgtttttattaact |
43384184 |
T |
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| Q |
115 |
tctcttcatacttacctaactgcgccatcgccatcttacaactcaattaaaattaatttaagtgcagtattatattgtgattcagggtctttcctaacat |
214 |
Q |
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| T |
43384185 |
tctcttcatacttacctaactgcgccatcgccatcttacaactcaattaaaattaatttaagtgcagtattatattgtgattcagggtctttcctaacat |
43384284 |
T |
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| Q |
215 |
catgagaaaacgatatatatagtttgtagtgaaattaagggttttgtaaaataaatattannnnnnnataccgctcccctccttcttccctcccaatgta |
314 |
Q |
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| T |
43384285 |
catgagaaaacg----atatagtttgtagtgaaattaagggttttgtaaaataaatattatttttctatcccgctcccctacttcttccctcccaatgta |
43384380 |
T |
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| Q |
315 |
gggaaaacga |
324 |
Q |
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|||||||||| |
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| T |
43384381 |
gggaaaacga |
43384390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Original strand, 43384396 - 43384430
Alignment:
| Q |
371 |
tgtactacaactcaatccatacatataagcgcctt |
405 |
Q |
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| T |
43384396 |
tgtactacaactcaatacatacatataagcgcctt |
43384430 |
T |
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