View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5579_low_8 (Length: 355)
Name: NF5579_low_8
Description: NF5579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5579_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 5401258 - 5401590
Alignment:
| Q |
1 |
aagtggacaaatgtgagcttcttagggtattttgtatattaccattgaaataaaaggctaatgagaataatgtgtaatgcactaacctcttcgaacaaga |
100 |
Q |
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| T |
5401258 |
aagtggacaaatgtgagcttcttagggtattttgtatattaccattgaaataaaaggctaatgagaataatgtgtaatgcactaacctcttcgaacaaga |
5401357 |
T |
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| Q |
101 |
tatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggtttgatcttaccgatgatttcaaaggg |
200 |
Q |
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| T |
5401358 |
tatcctctaatgtgtaatagaaattgggtgtgtcgaggcgtggcacatcctctgtgaagggggactcatgaggtttgatcttaccgatgatttcgaaggg |
5401457 |
T |
|
| Q |
201 |
tcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcctcaacatggcaccattc |
300 |
Q |
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| T |
5401458 |
tcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcctcaacatggcaccattc |
5401557 |
T |
|
| Q |
301 |
acctcacaattttgagcctccgtgggtctgctg |
333 |
Q |
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| T |
5401558 |
acctcacaattttgagcctccgtgggtctgctg |
5401590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 77 - 320
Target Start/End: Original strand, 5395187 - 5395430
Alignment:
| Q |
77 |
atgcactaacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggttt |
176 |
Q |
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| T |
5395187 |
atgcaccaacctcttctaacaagatatcctcctgtgtgtaatagaaattgggtgtgacaaggcgtggcacatcctccgtgaagggggactcatgggcctt |
5395286 |
T |
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| Q |
177 |
gatcttaccgatgatttcaaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaagg |
276 |
Q |
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| T |
5395287 |
gatcttaccgatcgtttcgaaggatcctaggtagtgcttagttcctgtttgaagggacacatggcaaagattgagagtatttgggatgagggctcgaagg |
5395386 |
T |
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| Q |
277 |
acgttcctcaacatggcaccattcacctcacaattttgagcctc |
320 |
Q |
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| T |
5395387 |
acgttccttaacattgaaccgttaacttcgcagttttgagcctc |
5395430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 290
Target Start/End: Original strand, 5391383 - 5391589
Alignment:
| Q |
84 |
aacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggtttgatctta |
183 |
Q |
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| T |
5391383 |
aacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatctta |
5391482 |
T |
|
| Q |
184 |
ccgatgatttcaaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcc |
283 |
Q |
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|||| |||||||||| ||| | ||||||||| || || ||||| |||||||| ||||||| ||| ||||||||| |||||| |||||||||||| |
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| T |
5391483 |
ccgactatttcaaaggatccaaagtagtgcttgattcccgtttgaagggacacatgacaaagattcagagtatttgggatgagggctcgaaggacgttcc |
5391582 |
T |
|
| Q |
284 |
tcaacat |
290 |
Q |
| |
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| ||||| |
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| T |
5391583 |
ttaacat |
5391589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 47349625 - 47349558
Alignment:
| Q |
196 |
aagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggat |
263 |
Q |
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| T |
47349625 |
aagggtcctaaatagtgtttcccaccagtttgaagagacacgtggcagagattcggagcatttgggat |
47349558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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