View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5580-Insertion-1 (Length: 112)
Name: NF5580-Insertion-1
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5580-Insertion-1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 5663702 - 5663602
Alignment:
| Q |
12 |
caatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttctaacaatatactcataagttatgaagggtgccac |
111 |
Q |
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| T |
5663702 |
caatgtgtgtcttcttgtccaatgctactaaccattgtaccactagcacccacaatatatattttctaacaatatactcgtaagttatgaagggtgccac |
5663603 |
T |
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| Q |
112 |
t |
112 |
Q |
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| T |
5663602 |
t |
5663602 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 5664777 - 5664702
Alignment:
| Q |
7 |
attaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttctaaca |
82 |
Q |
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| T |
5664777 |
attaccaatgtgtgccttcttgtccaatgccacataccactctacaacttgcttccacactatatattttctaaca |
5664702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 24853488 - 24853562
Alignment:
| Q |
7 |
attaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttctaaca |
82 |
Q |
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| T |
24853488 |
attaccaatatgtgtcctcttgtccaatgctactaaacactccaccactagctcctacactatat-ttttctaaca |
24853562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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