View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5580-Insertion-2 (Length: 432)
Name: NF5580-Insertion-2
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5580-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 42078561 - 42078742
Alignment:
| Q |
4 |
aacaaagataacattttattaggataaatctccaatcaaatacaattaaatagtgactaaaagtatttacaagctcgccacctctttcacgaagtatcat |
103 |
Q |
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| T |
42078561 |
aacaaagataacattttattaggataaatctccaatcaaatacaattaaatagtgactaaaagtatttacaggctcgccacctctttcacgaagtatcat |
42078660 |
T |
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| Q |
104 |
tgtccactac---------------tgttaggaatggatccattcatgcgacatgagcatccatcgaaatcccaatcatcca |
170 |
Q |
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| T |
42078661 |
tgtccactacttagacaaccactattgttaggaatggatccattcatgcgacatgagcatccatcgaaatcccaatcatcca |
42078742 |
T |
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