View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5580-Insertion-4 (Length: 1010)

Name: NF5580-Insertion-4
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5580-Insertion-4
NF5580-Insertion-4
[»] chr3 (6 HSPs)
chr3 (527-967)||(39140456-39140908)
chr3 (50-327)||(39141310-39141587)
chr3 (336-544)||(39140920-39141117)
chr3 (768-831)||(41264839-41264902)
chr3 (776-843)||(48660129-48660196)
chr3 (768-833)||(36343802-36343867)
[»] chr8 (2 HSPs)
chr8 (777-843)||(2259804-2259870)
chr8 (777-843)||(35699652-35699718)
[»] chr2 (2 HSPs)
chr2 (773-843)||(36330481-36330551)
chr2 (744-808)||(13783439-13783503)
[»] chr7 (2 HSPs)
chr7 (773-833)||(23777067-23777127)
chr7 (733-807)||(19367103-19367177)
[»] chr5 (2 HSPs)
chr5 (773-833)||(27514504-27514564)
chr5 (757-807)||(43259889-43259939)
[»] chr4 (5 HSPs)
chr4 (767-835)||(21188100-21188168)
chr4 (757-807)||(3257828-3257878)
chr4 (741-843)||(32896611-32896713)
chr4 (762-835)||(27246246-27246319)
chr4 (780-833)||(43955631-43955684)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 527 - 967
Target Start/End: Complemental strand, 39140908 - 39140456
Alignment:
Q  527 gaataaagaaggaacgttgaatggtaattttcgagaaaatgaaggagaaaaagaaataaaaatggagtcaataacatctctttgaagtgaatgcccttat 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  39140908 gaataaagaaggaacgttgaatggtaattttcgagaaaatgaaggagaaaaagaaataaaaatggagtcaataacatctctttgaagtggatgccctttt 39140809  T
Q  627 tattggtgaacttttaaagcgaatgtcatggtacaaatactacattgaaaacacgaatctgaaaaagagaagaacaaattgagagaaaaactaattattt 726  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39140808 cattggtgaacttttaaagcgaatgtcatggtacaaatactacattcaaaacacgaatctgaaaaagagaagaacaaattgagagaaaaactgattattt 39140709  T
Q  727 gaaagagtgggcacggctcagtttggaataaaaa-ttgaatcgaatggaactgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcatttt 825  Q
    ||| ||||||| | || ||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39140708 gaaggagtgggtatggttcagtttggaataaaaatttgaatcgaatgaaactgtttgttaagtttaaaatgattgaactgaatcgaattgtctgcatttt 39140609  T
Q  826 gaactgaatcgaagtgttatgactagtaccgttaaaaagaatatat-aaaaccaaacgaaattaaattgtagttactgaactgttt-gagttgaaccg-- 921  Q
    ||| |||| |||||||||||  || ||||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||| |||| ||||||      
T  39140608 gaattgaaccgaagtgttatcgctggtaccgttaaaaagaatatataaaaaccaaacgaaatcgaattgtagttattgaactgtttcgagtcgaaccgaa 39140509  T
Q  922 ----tttgaacc-aatcgaactatttcag-ttcat-attggatagtaatggtt 967  Q
        |||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  39140508 ctgttttgaaccgaatcgaactatttcagtttcataattggatagtaatggtt 39140456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 50 - 327
Target Start/End: Complemental strand, 39141587 - 39141310
Alignment:
Q  50 cgtgaattttagaatagaattacaaattataaacatcaaacctgaaaaattatatcatataaaacctacgttcaaccnnnnnnnntactaaattaagaac 149  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||        |||||||||||||||    
T  39141587 cgtgaattttagaatagaattacaaattataaacattaaacctaaaaaattatatcatataaaacctacgttcaaccaaaaaaaatactaaattaagaac 39141488  T
Q  150 tccaactctaaatttgagagaccatcaaaaactaaactaggcgaataaagcttatccatcacaatgttaggatgttctcagacaacgggagcaacgtcag 249  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39141487 tccaactctaaatttgagagaccatcaaatactaaactaggcgaataaagcttatccatcacaatgttaggatgttctcggacaacgggagcaacgtcag 39141388  T
Q  250 gctaatgatgagaatcatcaagaaattgagatatcatagctctactcaaaattttaaagcatttagtatatgagtcaa 327  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  39141387 gctaatgatgagaatcatcaagaaattgagacatcatagcactactcaaaattttaaagcatttagtatatgagtcaa 39141310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 336 - 544
Target Start/End: Complemental strand, 39141117 - 39140920
Alignment:
Q  336 agtgatagtcgtttcttttatatctaatatt-aacgcattcatcggcaatgttaaactaaccactaacacttaaatccaactaaagacaaacatacagga 434  Q
    |||| ||||| |||||||||||||||||||| |||||| |||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39141117 agtggtagtcatttcttttatatctaatatttaacgcactcatcgtcgatgttaaactaaccactaacacttaaatccaacttaagacaaacatacagga 39141018  T
Q  435 aatggtaaattcgcaagcacatatatataagcaatgaattgcaagtagcaatgtagacagagcaaaatctcaaaaaacttgacaaaaataaagaataaag 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||| ||||||||||||||||||||||    
T  39141017 aatggtaaattcgcaagcacatatatataagcaatgaattgcaagt------------agagcaaaatctcaaaaaatttgacaaaaataaagaataaag 39140930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 768 - 831
Target Start/End: Original strand, 41264839 - 41264902
Alignment:
Q  768 gaatggaactgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactg 831  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||    
T  41264839 gaatcgaactgtttgttaaatttaaaataattgaactgaatcgaattgtttgtattttgaactg 41264902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 776 - 843
Target Start/End: Original strand, 48660129 - 48660196
Alignment:
Q  776 ctgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaatcgaagtgtt 843  Q
    |||||||| ||||||||||| |||||| |||||| |||||| ||||||| ||| ||||||||| ||||    
T  48660129 ctgtttgtaaaatttaaaataattgaattgaatcaaattgtttgcatttcgaattgaatcgaactgtt 48660196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 768 - 833
Target Start/End: Complemental strand, 36343867 - 36343802
Alignment:
Q  768 gaatggaactgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaa 833  Q
    |||| ||||||| ||||||||||||||| |||||| ||||   |||||| ||||||||||| ||||    
T  36343867 gaattgaactgtatgttaaatttaaaataattgaattgaactaaattgtttgcattttgaattgaa 36343802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 777 - 843
Target Start/End: Original strand, 2259804 - 2259870
Alignment:
Q  777 tgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaatcgaagtgtt 843  Q
    ||||||||||||||||||| ||||||| |||||||| ||| |||||||| || |||| |||| ||||    
T  2259804 tgtttgttaaatttaaaataattgaaccgaatcgaactgtttgcattttaaattgaaccgaactgtt 2259870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 777 - 843
Target Start/End: Complemental strand, 35699718 - 35699652
Alignment:
Q  777 tgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaatcgaagtgtt 843  Q
    |||||| |||||||||||| ||||||||| || ||||||| ||||||| |||||||| |||| ||||    
T  35699718 tgtttgataaatttaaaataattgaactggattgaattgtttgcatttcgaactgaaccgaactgtt 35699652  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 773 - 843
Target Start/End: Complemental strand, 36330551 - 36330481
Alignment:
Q  773 gaactgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaatcgaagtgtt 843  Q
    ||||| ||||||||| ||||||| | |||||||||||||| | | ||||||||||||||||| ||| ||||    
T  36330551 gaactatttgttaaaattaaaataactgaactgaatcgaactatttgcattttgaactgaattgaactgtt 36330481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 744 - 808
Target Start/End: Complemental strand, 13783503 - 13783439
Alignment:
Q  744 tcagtttggaataaaaattgaatcgaatggaactgtttgttaaatttaaaatgattgaactgaat 808  Q
    ||||||||| |||||||| ||||||||  ||| ||||||||||||||||||| | | ||||||||    
T  13783503 tcagtttgggataaaaatcgaatcgaactgaattgtttgttaaatttaaaataactaaactgaat 13783439  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 773 - 833
Target Start/End: Original strand, 23777067 - 23777127
Alignment:
Q  773 gaactgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaa 833  Q
    |||||||||| |||||||||||| |||||||||||  ||| ||| || |||||||||||||    
T  23777067 gaactgtttgctaaatttaaaataattgaactgaactgaaatgtttgtattttgaactgaa 23777127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 733 - 807
Target Start/End: Original strand, 19367103 - 19367177
Alignment:
Q  733 gtgggcacggctcagtttggaataaaaattgaatcgaatggaactgtttgttaaatttaaaatgattgaactgaa 807  Q
    ||||||| || |||||| || || |||| |||||||||  |||||||||| |||||||||||| | |||||||||    
T  19367103 gtgggcatggttcagttcgggatgaaaactgaatcgaactgaactgtttgctaaatttaaaataactgaactgaa 19367177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 773 - 833
Target Start/End: Complemental strand, 27514564 - 27514504
Alignment:
Q  773 gaactgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaa 833  Q
    |||||||||||||||||| |||| |||||||||||   |||||| ||||||| ||||||||    
T  27514564 gaactgtttgttaaattttaaataattgaactgaactaaattgtttgcatttcgaactgaa 27514504  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 757 - 807
Target Start/End: Complemental strand, 43259939 - 43259889
Alignment:
Q  757 aaaattgaatcgaatggaactgtttgttaaatttaaaatgattgaactgaa 807  Q
    |||| |||||||||  ||||||||||||||||||||||| | |||||||||    
T  43259939 aaaactgaatcgaactgaactgtttgttaaatttaaaataactgaactgaa 43259889  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 767 - 835
Target Start/End: Original strand, 21188100 - 21188168
Alignment:
Q  767 cgaatggaactgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaatc 835  Q
    |||||||||||||||| |||||||||||| ||| ||| ||||| || ||| || |||||||||| ||||    
T  21188100 cgaatggaactgtttgataaatttaaaattattaaaccgaatcaaactgtttgtattttgaactaaatc 21188168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 757 - 807
Target Start/End: Complemental strand, 3257878 - 3257828
Alignment:
Q  757 aaaattgaatcgaatggaactgtttgttaaatttaaaatgattgaactgaa 807  Q
    ||||||||||||||  |||||||||| |||||||| ||| |||||||||||    
T  3257878 aaaattgaatcgaactgaactgtttggtaaatttataataattgaactgaa 3257828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 741 - 843
Target Start/End: Complemental strand, 32896713 - 32896611
Alignment:
Q  741 ggctcagtttggaataaaaattgaatcgaatggaactgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaatcgaagt 840  Q
    |||||| || |||||||||| | || ||||  |||||||||| ||||||||| || | |||  |||| |||| ||| |||||||||||||||| |||| |    
T  32896713 ggctcacttcggaataaaaactaaaccgaactgaactgtttgctaaatttaagataactgagttgaaccgaactgtttgcattttgaactgaaccgaatt 32896614  T
Q  841 gtt 843  Q
    |||    
T  32896613 gtt 32896611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 762 - 835
Target Start/End: Original strand, 27246246 - 27246319
Alignment:
Q  762 tgaatcgaatggaactgtttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaatc 835  Q
    |||| ||||| ||| |||||| |||||||||||| ||| ||| ||||| |||||| || |||||||||| ||||    
T  27246246 tgaaccgaattgaattgtttgataaatttaaaattattaaaccgaatcaaattgtttgtattttgaactaaatc 27246319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 780 - 833
Target Start/End: Complemental strand, 43955684 - 43955631
Alignment:
Q  780 ttgttaaatttaaaatgattgaactgaatcgaattgtctgcattttgaactgaa 833  Q
    |||||||||||||||| | |||||| ||||||| ||| ||||||| ||||||||    
T  43955684 ttgttaaatttaaaataactgaacttaatcgaactgtttgcatttcgaactgaa 43955631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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