View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5580_high_6 (Length: 263)
Name: NF5580_high_6
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5580_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 39142092 - 39141844
Alignment:
| Q |
13 |
aatatcaactaattttaactat----aacaatgtttaacaagtttaaagtgtaaataacatttccgacttgaaatgagaaatacaatctaagataaagaa |
108 |
Q |
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| T |
39142092 |
aatatcaactaattttaactatcttaaacaatgtttaacaagtttaaagtgtaaataacatttccgacttgaaatgagaaatacaatctaagataaagaa |
39141993 |
T |
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| Q |
109 |
aatataattcaacagaatagtggaaattacaagtatgtaatcacatctcttatnnnnnnnnnnnnnnnnnggttgcattcacattcacatcaactacata |
208 |
Q |
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| T |
39141992 |
aatataattcaacagaatagtggaaattacaagtatgtaatcacatctcttat------aaaaaaaaaaaggttgcattcacattcacatcaactacata |
39141899 |
T |
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| Q |
209 |
agaaaaagtcgatgaaaatagtggcggcgatcaaaggtactagactcctaaatat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39141898 |
agaaaaagtcgatgaaaatagtggcggcgatcaaaggtacttgactcctaaatat |
39141844 |
T |
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