View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5580_high_8 (Length: 246)
Name: NF5580_high_8
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5580_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 92 - 235
Target Start/End: Original strand, 39141720 - 39141867
Alignment:
| Q |
92 |
gcaaatcaatatttatcatggtatggaggtgatttgcaattcaaagtaaatgaacgaaacgcacaggt---at-acttgtagattcacaataagaaagtc |
187 |
Q |
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| T |
39141720 |
gcaaatcaatatttatcatggtatggaggtgatttgcaattcaaagtaaatgaacgaaacgcacaggttagatcacttgtagagtcacaataagaaagtc |
39141819 |
T |
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| Q |
188 |
aagggatttggaagtatggtgtagatatttaggagtctagtacctttg |
235 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
39141820 |
aagggacttggaagtatggtgtagatatttaggagtcaagtacctttg |
39141867 |
T |
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