View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5580_high_9 (Length: 239)
Name: NF5580_high_9
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5580_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 38056173 - 38056334
Alignment:
| Q |
1 |
aatgaccaaaatatcactgttgttaggtaagctaccaaaataatacaggattacatgagaaa--ttttgtcttgtttgacaaaaggcgcaaaatcggata |
98 |
Q |
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| T |
38056173 |
aatgaccaaaatatcactgttgttaggtaagctaccaaaataatacaggattacatgagaaaattttcgtcttgtttgacaaaaggcgcaaaatcggata |
38056272 |
T |
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| Q |
99 |
tgctaatatcataatattaacatttaaagnnnnnnntcagatatgctaacattgtttttgac |
160 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38056273 |
tgctaatatcataatattaacatttaaagaaaaaaatcagatatgctaacattgtttttgac |
38056334 |
T |
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