View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5580_low_1 (Length: 465)

Name: NF5580_low_1
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5580_low_1
NF5580_low_1
[»] chr3 (5 HSPs)
chr3 (20-455)||(25992701-25993129)
chr3 (23-455)||(25988593-25989017)
chr3 (224-290)||(7516157-7516223)
chr3 (333-433)||(1704914-1705014)
chr3 (329-416)||(7516263-7516350)
[»] chr2 (2 HSPs)
chr2 (224-433)||(12808606-12808816)
chr2 (224-439)||(16316221-16316437)
[»] chr8 (2 HSPs)
chr8 (224-439)||(24997040-24997255)
chr8 (224-439)||(9781985-9782200)
[»] chr7 (1 HSPs)
chr7 (224-414)||(43006072-43006263)
[»] chr4 (2 HSPs)
chr4 (224-294)||(20920406-20920476)
chr4 (346-381)||(8342547-8342582)
[»] chr6 (1 HSPs)
chr6 (334-381)||(10162206-10162253)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 455
Target Start/End: Complemental strand, 25993129 - 25992701
Alignment:
Q  20 tctctttcttcaagcgtcatgtgtgaattcactgcaaaacaagtaaaaattacatgaaaaaataatatttctctttccaaataatccaaattgaacagag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  25993129 tctctttcttcaagcgtcatgtgtgaattcactgcaaaacaagtaaaaattacatgaaaaaata---tttctctttccaaataatccaaattgaaaagag 25993033  T
Q  120 agttaacatcttttctccttaattttattagtatttttcatgaatgttcaagcattatcttggttttataggtaaattggcaatagtgnnnnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  25993032 agttaacatcttttctccttaattttattagtatttttcatgaatgttcaagcattatcttggttttataggtaaattggcaatagtg-----ttttttt 25992938  T
Q  220 naacaaatcaaaatgatatattaacacaaaacaacggactatctggacggcacaagatggaccatctaagacatccgggaagtacaacaagagttc-nnn 318  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        
T  25992937 taacaaatcaaaatgatatattaacacaaaacaacggactatctggacggcacaagatgtaccatctaagacatccgggaagtacaacaagagttcaaca 25992838  T
Q  319 nnnntgaaagtaacctagccaatacatgcacataagaatgggttttgacaccaattatgaaagttaaaataaaagtttacacatttaactttaaaccatc 418  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  25992837 aaaaggaaagtaacctagccaatacatgcacataagaatgggttttgacaccaattatgaaagctaaaataaaagtttacagatttaactttaaaccatc 25992738  T
Q  419 agaagaaaagaagttgaacatatatatcttacctatg 455  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  25992737 agaaggaaagaagtttaacatatatatcttacctatg 25992701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 23 - 455
Target Start/End: Complemental strand, 25989017 - 25988593
Alignment:
Q  23 ctttcttcaagcgtcatgtgtgaattcactgcaaaacaagtaaaaattacatgaaaaaataatatttctctttccaaataatccaaattgaacagagagt 122  Q
    |||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||||| || ||||  |    
T  25989017 ctttcttcaatcatcatgtttgaattcactgcaaaacaattaaaaattacatgaaaaaata---tttctctttccaaataatccaaattaaaaagag--t 25988923  T
Q  123 taacatcttttctccttaattttattagtatttttcatgaatgttcaagcattatcttggttttataggtaaattggcaatagtgnnnnnnnnnnnnnaa 222  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||             ||    
T  25988922 taacatcttttctccttaattttattagtatttttcattaatgttcaaacattatctaggttttataggtaaattggcaatagtg----tttttttttaa 25988827  T
Q  223 caaatcaaaatgatatattaacacaaaacaacggactatctggacggcacaagatggaccatctaagacatccgggaagtacaacaagagttc-nnnnnn 321  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| ||           
T  25988826 taaatcaaaatgatatattaacacaaaacaacggactatctggacggcaaaagatgtaccatctaagacatccgagaagtacaacaagaggtcaacaaaa 25988727  T
Q  322 ntgaaagtaacctagccaatacatgcacataagaatgggttttgacaccaattatgaaagttaaaataaaagtttacacatttaactttaaaccatcaga 421  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  25988726 aggaaagtaacctagccaatacatgcacataagaatgggttttgacaccaattatgaaagctaaaataaaagtttacagatttaactttaaaccatcaga 25988627  T
Q  422 agaaaagaagttgaacatatatatcttacctatg 455  Q
    || ||||||||| |||||||||||||||||||||    
T  25988626 aggaaagaagtttaacatatatatcttacctatg 25988593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 7516157 - 7516223
Alignment:
Q  224 aaatcaaaatgatatattaacacaaaacaacggactatctggacggcacaagatggaccatctaaga 290  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||  ||||||||||    
T  7516157 aaatcaaaatgatatattaactccaaacaacggactatctagacggcacaagatgtcccatctaaga 7516223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 433
Target Start/End: Original strand, 1704914 - 1705014
Alignment:
Q  333 ctagccaatacatgcacataagaatgggttttgacaccaattatgaaagttaaaataaaagtttacacatttaactttaaaccatcagaagaaaagaagt 432  Q
    |||||||||||  ||||||||||||  |||||| ||||||||||||||  || |||||||||||||| ||||| |||||| ||| | |||| ||| ||||    
T  1704914 ctagccaatacccgcacataagaattagttttggcaccaattatgaaaagtataataaaagtttacaaatttagctttaagccaccggaaggaaaaaagt 1705013  T
Q  433 t 433  Q
    |    
T  1705014 t 1705014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 416
Target Start/End: Original strand, 7516263 - 7516350
Alignment:
Q  329 taacctagccaatacatgcacataagaatgggttttgacaccaattatgaaagttaaaataaaagtttacacatttaactttaaacca 416  Q
    ||| ||||||||||   ||| |||||||||  ||||| || |||||||||||| || |||||||||||||| || || ||||||||||    
T  7516263 taaactagccaataaccgcatataagaatgaattttggcatcaattatgaaagctataataaaagtttacagatgtagctttaaacca 7516350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 224 - 433
Target Start/End: Complemental strand, 12808816 - 12808606
Alignment:
Q  224 aaatcaaaatgatatattaacacaaaacaacggactatctggacggcacaagatggaccatctaagacatccgggaagtacaacaagagttcnnnnnnnt 323  Q
    |||| ||||||||||||||| |||||||||| |||||||| ||||||| |||||| | ||| ||||||||| |  |||||||||||||||||            
T  12808816 aaattaaaatgatatattaatacaaaacaacagactatctagacggcataagatgtaacatttaagacatctgaaaagtacaacaagagttcagcaaaag 12808717  T
Q  324 g-aaagtaacctagccaatacatgcacataagaatgggttttgacaccaattatgaaagttaaaataaaagtttacacatttaactttaaaccatcagaa 422  Q
    | ||| ||| |||||||||||  |||||||||||||||||||| || |||||||||||| ||||||||||||||||| ||||| |||||||||| |||||    
T  12808716 ggaaaataaactagccaatacccgcacataagaatgggttttggcatcaattatgaaagctaaaataaaagtttacatatttagctttaaaccaccagaa 12808617  T
Q  423 gaaaagaagtt 433  Q
    | |||||||||    
T  12808616 ggaaagaagtt 12808606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 224 - 439
Target Start/End: Complemental strand, 16316437 - 16316221
Alignment:
Q  224 aaatcaaaatgatatattaacacaaaacaacggactatctggacggcacaagatggaccatctaagacatccgggaagtacaacaagagttcnnnnnnnt 323  Q
    ||||||||||||||||||||||| ||||||| |||||||| || || |||||||| ||||| ||||||| |||  |||||||||||  ||||            
T  16316437 aaatcaaaatgatatattaacaccaaacaacagactatctagatggtacaagatgtaccatgtaagacaaccgaaaagtacaacaaatgttcagcaaaaa 16316338  T
Q  324 gaa-agtaacctagccaatacatgcacataagaatgggttttgacaccaattatgaaagttaaaataaaagtttacacatttaactttaaaccatcagaa 422  Q
    | | | ||| |||| |||||    ||||||||||||||||||||||||||||||||||| || |||||||||||||| || || |||||||||| |||||    
T  16316337 gtataataaactagtcaatagccacacataagaatgggttttgacaccaattatgaaagctataataaaagtttacagatgtagctttaaaccaccagaa 16316238  T
Q  423 gaaaagaagttgaacat 439  Q
    | | ||||||| |||||    
T  16316237 ggagagaagtttaacat 16316221  T

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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 224 - 439
Target Start/End: Original strand, 24997040 - 24997255
Alignment:
Q  224 aaatcaaaatgatatattaacacaaaacaacggactatctggacggcacaagatggaccatctaagacatccgggaagtacaacaagagttcnnnnnnnt 323  Q
    ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |||||| |||||| |||  |||||||||||| |||             
T  24997040 aaatcaaaatgatatattaacacgaaacaacgggctatctagacggcacaagatgtaccatcgaagacaaccgaaaagtacaacaagtgtttagctaaaa 24997139  T
Q  324 gaaagtaacctagccaatacatgcacataagaatgggttttgacaccaattatgaaagttaaaataaaagtttacacatttaactttaaaccatcagaag 423  Q
    ||||   | |||||||||||  |||||||||||||||||||| ||||||| ||||||  || |||||||||||||| ||||| |||||||||| ||||||    
T  24997140 gaaaaataactagccaatacccgcacataagaatgggttttggcaccaatcatgaaaactataataaaagtttacagatttagctttaaaccaccagaag 24997239  T
Q  424 aaaagaagttgaacat 439  Q
     | ||||||| |||||    
T  24997240 gagagaagtttaacat 24997255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 224 - 439
Target Start/End: Complemental strand, 9782200 - 9781985
Alignment:
Q  224 aaatcaaaatgatatattaacacaaaacaacggactatctggacggcacaagatggaccatctaagacatccgggaagtacaacaagagttcnnnnnnnt 323  Q
    |||||||||||| |||||||||| |||| || |||||||| |||||||||||||| |||| | |||||| |||  || | || ||||||||             
T  9782200 aaatcaaaatgagatattaacacgaaacgacagactatcttgacggcacaagatgtaccaccaaagacagccgaaaaatgcatcaagagttttgcaaata 9782101  T
Q  324 g-aaagtaacctagccaatacatgcacataagaatgggttttgacaccaattatgaaagttaaaataaaagtttacacatttaactttaaaccatcagaa 422  Q
    | ||||||| ||||||||| |  ||||||||||| ||| |||||||||  ||||||||| || |||||||||||||||||||| || ||||||| |||||    
T  9782100 gcaaagtaaactagccaatccc-gcacataagaaaggggtttgacaccggttatgaaagctataataaaagtttacacatttagctataaaccaccagaa 9782002  T
Q  423 gaaaagaagttgaacat 439  Q
    | |||| |||| |||||    
T  9782001 ggaaaggagtttaacat 9781985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 224 - 414
Target Start/End: Complemental strand, 43006263 - 43006072
Alignment:
Q  224 aaatcaaaatgatatattaacacaaaacaacggactatctggacggcacaagatggaccatctaagacatccgggaagtacaacaagagttcnnnnnnnt 323  Q
    ||||||||||||||||||||||  ||||||| |||||||| |||||||||||||  |||| |||||||||| |  || |||||||| ||| |            
T  43006263 aaatcaaaatgatatattaacatgaaacaacagactatcttgacggcacaagatataccacctaagacatctgaaaaatacaacaacagtgcaacaaaga 43006164  T
Q  324 g-aaagtaacctagccaatacatgcacataagaatgggttttgacaccaattatgaaagttaaaataaaagtttacacatttaactttaaac 414  Q
    | ||| ||| |||||||||||  ||||||||||| | |||||| ||||||||||||||| || |||||||||||||| ||||| ||||||||    
T  43006163 gcaaaataaactagccaatacccgcacataagaacgagttttggcaccaattatgaaagctataataaaagtttacaaatttagctttaaac 43006072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 20920476 - 20920406
Alignment:
Q  224 aaatcaaaatgatatattaacacaaaacaacggactatctggacggcacaagatggaccatctaagacatc 294  Q
    |||||||||||||||||||||| ||||||| ||||||||| || |||| |||||| |||| ||| ||||||    
T  20920476 aaatcaaaatgatatattaacaaaaaacaatggactatcttgatggcataagatgtaccacctacgacatc 20920406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 381
Target Start/End: Complemental strand, 8342582 - 8342547
Alignment:
Q  346 gcacataagaatgggttttgacaccaattatgaaag 381  Q
    |||||||||||||||||||||||||||| |||||||    
T  8342582 gcacataagaatgggttttgacaccaatcatgaaag 8342547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 10162253 - 10162206
Alignment:
Q  334 tagccaatacatgcacataagaatgggttttgacaccaattatgaaag 381  Q
    |||||||| | |||||||||||||| ||||||||||||||||||||||    
T  10162253 tagccaattcctgcacataagaatgagttttgacaccaattatgaaag 10162206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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