View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5580_low_10 (Length: 222)

Name: NF5580_low_10
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5580_low_10
NF5580_low_10
[»] chr5 (5 HSPs)
chr5 (53-204)||(5663704-5663855)
chr5 (129-204)||(5046440-5046515)
chr5 (129-204)||(5047211-5047286)
chr5 (129-204)||(5047982-5048057)
chr5 (63-177)||(5664784-5664895)
[»] scaffold0406 (1 HSPs)
scaffold0406 (129-204)||(6272-6347)
[»] chr4 (4 HSPs)
chr4 (129-204)||(28787952-28788027)
chr4 (129-204)||(51246614-51246689)
chr4 (129-204)||(17525522-17525597)
chr4 (129-186)||(28787018-28787075)
[»] chr7 (1 HSPs)
chr7 (129-204)||(22622406-22622481)
[»] chr1 (2 HSPs)
chr1 (138-177)||(29371922-29371961)
chr1 (151-204)||(22055518-22055571)
[»] chr3 (2 HSPs)
chr3 (129-204)||(12739334-12739409)
chr3 (129-186)||(12738201-12738258)
[»] chr8 (1 HSPs)
chr8 (118-188)||(1275221-1275291)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 5663704 - 5663855
Alignment:
Q  53 taaatagctcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcacccatataattc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663704 taaatagctcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcacccatataattc 5663803  T
Q  153 tatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5663804 tatttataagtgattgaagatgtttctaaaactagaagagtctaggcctttg 5663855  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 5046515 - 5046440
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    |||||||| |||| ||||||| |||||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  5046515 aatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttg 5046440  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 5047286 - 5047211
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  5047286 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttg 5047211  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 5048057 - 5047982
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||| ||||||||||| | ||||||||||||    
T  5048057 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctaggcctttg 5047982  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 5664784 - 5664895
Alignment:
Q  63 attgtagaaggagagaatatagtatatggaagcccttaatat-attgtaattgtatttaaatgtttaaatacaatcgcacccatataattctatttataa 161  Q
    ||||||| ||||||||||||  || | ||||||||| ||||| ||||| |||||||||||| | || |||||||| |||||||||||| ||    ||||     
T  5664784 attgtaggaggagagaatatgatacagggaagccctcaatattattgtcattgtatttaaaagcttgaatacaattgcacccatataagtc----tatag 5664879  T
Q  162 gtgcttgaagatgttt 177  Q
    ||||||||||||||||    
T  5664880 gtgcttgaagatgttt 5664895  T

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Target: scaffold0406 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 6347 - 6272
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    ||||||||  ||||||||||| |||||||||| |||||||||| |||||||| |||||||| | ||||||||||||    
T  6347 aatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctaggcctttg 6272  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 28788027 - 28787952
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    |||||||| |||||||||||  |||||||||| ||| ||||||||||||||| |||||||| | ||||||||||||    
T  28788027 aatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctaggcctttg 28787952  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 51246689 - 51246614
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    |||||||| |||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| | ||||||||||||    
T  51246689 aatacaattgcacccatataagtctacttataggtgcttgtagatgtttctagaactagaataatctaggcctttg 51246614  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 17525522 - 17525597
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    ||||||||  ||| ||||||| |||||||||||| ||||| ||||||||||| |||||||| | ||||||||||||    
T  17525522 aatacaatttcacacatataagtctatttataagcgcttgtagatgtttctagaactagaataatctaggcctttg 17525597  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 28787075 - 28787018
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaacta 186  Q
    |||||||| ||||| |||||  |||||||||| ||||||||||||||||||| |||||    
T  28787075 aatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctagaacta 28787018  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 22622406 - 22622481
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    |||||||| ||||||||||||  |||||||||||||| |||||||||||||| || ||||| | |||||| |||||    
T  22622406 aatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctaggtctttg 22622481  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 29371961 - 29371922
Alignment:
Q  138 gcacccatataattctatttataagtgcttgaagatgttt 177  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  29371961 gcacccatataaatctatttataagtgcttgaagatgttt 29371922  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 22055518 - 22055571
Alignment:
Q  151 tctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    |||||||||||||||||||||||| ||||| ||||| || | |||||| |||||    
T  22055518 tctatttataagtgcttgaagatgattctagaactaaaataatctaggtctttg 22055571  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 12739409 - 12739334
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttg 204  Q
    |||||||| ||| ||| |||||||||||||||  |||||| ||||||||||| ||||| || | ||||||| ||||    
T  12739409 aatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctaggcttttg 12739334  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 12738258 - 12738201
Alignment:
Q  129 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaacta 186  Q
    |||||||| ||||||| |||| | |||||||| ||||||| ||||||||||| |||||    
T  12738258 aatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaacta 12738201  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 1275221 - 1275291
Alignment:
Q  118 ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactaga 188  Q
    ||||| |||| |||||||| |||||||||||  | || ||||| |||||||||| |||||||| |||||||    
T  1275221 ttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactaga 1275291  T

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