View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5580_low_2 (Length: 430)
Name: NF5580_low_2
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5580_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 1160954 - 1161186
Alignment:
| Q |
1 |
tggaggcggtgctaaggggttgaattttgatggttcataattggatttcagagccatagctcaagcctctgtggtgttgtgattgtttgtttttgtggtt |
100 |
Q |
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| T |
1160954 |
tggaggcggtgctaaggggttgaattttgatggttcataattggatttcagagccataactcaagcctctgtagtgttgtgattgtttgtttttgtggtt |
1161053 |
T |
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| Q |
101 |
ctagagatcaattgttttctataggttat--------gtctttggggtgatgttccgcctatatgcggcatctttgtttttattgccaccgtctgtttgc |
192 |
Q |
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| T |
1161054 |
ctagagatcaattgttttctataggttatgtctttgggtctttggggtgatgttccgcctatatgtggcatctttgtttttattgccaccgtctctttgc |
1161153 |
T |
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| Q |
193 |
gttttgcgagagttttcggattaataatatttg |
225 |
Q |
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| T |
1161154 |
gtcttgcgagagttttcggattaataatatttg |
1161186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 249 - 426
Target Start/End: Original strand, 1161220 - 1161397
Alignment:
| Q |
249 |
gcttttgtctattttttgagcgcacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaagatgcatgtaa |
348 |
Q |
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| T |
1161220 |
gcttttgtctattttttgagcgtacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaagatgcatgtaa |
1161319 |
T |
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| Q |
349 |
gctgaatgatgcatcttgtatacttagatactcatcttatatatgcccggttgagttgaatgaatgatgatgtccatc |
426 |
Q |
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| T |
1161320 |
gctgaatgatgcatcttgtatacttagatactcatcttatatatgcccggttgagttgaatgaataatgttgtacatc |
1161397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 337
Target Start/End: Complemental strand, 880107 - 880022
Alignment:
| Q |
252 |
tttgtctattttttgagcgcacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaa |
337 |
Q |
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| T |
880107 |
tttgtctattttgtgagccttcatgacaaatatatttgcagagaatcattgctaacccaattcaaagaggttttttgcttcttgaa |
880022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 879994 - 879941
Alignment:
| Q |
338 |
gatgcatgtaagctgaatgatgcatcttgtatacttagatactcatcttatata |
391 |
Q |
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| T |
879994 |
gatgcatgtcagcagaatgatgcatcttgtatacttaggtactcatcttatata |
879941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 6645961 - 6645865
Alignment:
| Q |
137 |
gggtgatgttccgcctatatgcggcatctttgt--ttttattgccaccgtctgtttgcgttttgcgagagttttcggattaataatatttgtcatttc |
232 |
Q |
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| T |
6645961 |
gggtgatgttacgcctatatgcagcatctttgtactttttctgttaccgtctcttagcatattgcgagag-ttccggtttaataatatttgtcatttc |
6645865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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