View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5580_low_3 (Length: 418)
Name: NF5580_low_3
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5580_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 164 - 412
Target Start/End: Original strand, 42078328 - 42078569
Alignment:
| Q |
164 |
atgttatcaattacatgactttgacctttaccacgatctggagtcgtttgtgacctgtcttaactcttaaagatggatcaagttcattccaccaaagcac |
263 |
Q |
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| T |
42078328 |
atgttatcaattacatgactttgacctttaccacgatctggagtcgtttgtgacctgtctt-------aaagatggatcaagttgattccaccaaagcac |
42078420 |
T |
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| Q |
264 |
caacctaaactatctagaaaattaataccccatttatataaggtcacatagttcttaaggcatatgtcagtgtgtgtctgtgaattttagatgatatttt |
363 |
Q |
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| T |
42078421 |
caacctaaactatctagaaaattaataccccatttatataaggtcacatagttcttaaggcgtatgtcagtgtgtgtctgtgaattttagatgatatttt |
42078520 |
T |
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| Q |
364 |
tcatttcatctgcaaactaacaaaaactcacatatgtcggaacaaagat |
412 |
Q |
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| T |
42078521 |
tcatttcatctgcaaactaacaaaaactcacatatgtcggaacaaagat |
42078569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 42076652 - 42076744
Alignment:
| Q |
74 |
ttaggtgttctttttccacacaatattcaaaactaggtgtaagtaaatgtcatacatgcgttgcattataagttaattatgagcacttagatg |
166 |
Q |
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| T |
42076652 |
ttaggtgttctttttccacacaatattcaaaactaggtgtaagtaaatgtcacccatgcgttgcattataagttaattatgagcacttagatg |
42076744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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