View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5580_low_5 (Length: 317)
Name: NF5580_low_5
Description: NF5580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5580_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 39638891 - 39638574
Alignment:
| Q |
1 |
ctcataccagtttcatattcttcattttatccgtgtgtcgattgttataattcacaacatccaaactaaattnnnnnnnngcttggtcagnnnnnnn-ct |
99 |
Q |
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| T |
39638891 |
ctcataccagtttcatattattcattttatccgtgtgtcgattgttataattcacaacatccaaactaaattaaaaaaaagcttggtcagttttttttct |
39638792 |
T |
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| Q |
100 |
tcttcttttacagaggcactttcaaggttaaatgatgtgataacatccaaatgcacaacattatgataatgtaacggcatgttataatgctgtttcagct |
199 |
Q |
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| T |
39638791 |
tcttcttttacagaggcactttccaggttaaatgatgtgataacatccaaatgcacaacattatgataatgtaacggcatgttataatgctgtttcagct |
39638692 |
T |
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| Q |
200 |
cgtagaaaaatattccagttccaccgtgatagcataaatgtagcacaggtacataatacatgtttttgcaatcttagtcttgcgtgagatcataatatca |
299 |
Q |
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| T |
39638691 |
cgtagaaaaatattccagttccaccttgatagcataaatgtagcacaggtacatcatacatgtttttgcaatcttagtcttgcgtgagatcataatatca |
39638592 |
T |
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| Q |
300 |
ctcgaacaagtacaggtt |
317 |
Q |
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| T |
39638591 |
ctcgaacaagtacaggtt |
39638574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 102 - 317
Target Start/End: Complemental strand, 33281049 - 33280835
Alignment:
| Q |
102 |
ttcttttacagaggcactttcaaggttaaatgatgtgataaca--tccaaatgcacaacattatgataatgtaacggcatgttataatgctgtttcagct |
199 |
Q |
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| T |
33281049 |
ttcttctacagaggcactttcaaggttaaatgctgtgataacacatccaaatgcacagcattctgataatgtaatggcatatgataatgctgtttcagct |
33280950 |
T |
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| Q |
200 |
cgtagaaaaatattccagttccaccgtgatagcataaatgtagcacaggtacataatacatgtttttgcaatcttagtcttgcgtgagatcataatatca |
299 |
Q |
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| T |
33280949 |
cttggaaaaatatgccagttccaccgtgatagcataaatgcagcacaggtacatcatacatgtttttgtaatcttagtcttacatgtgatc---atatca |
33280853 |
T |
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| Q |
300 |
ctcgaacaagtacaggtt |
317 |
Q |
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| T |
33280852 |
ctcgaacaagtgcaggtt |
33280835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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