View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5581-Insertion-1 (Length: 202)
Name: NF5581-Insertion-1
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 39683849 - 39684016
Alignment:
| Q |
8 |
gttgaattcttagaacaatctgctaaagagtatggataccaacaaggtgtgcttagaatcatatgtgatgttgacgactttaaagacattcttgctaaca |
107 |
Q |
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| T |
39683849 |
gttgaattcttagaacaatctgctaaagagtatggataccaacaaggtgtgcttagaatcatatgtgatgttgacgactttaaagacattcttgctaaca |
39683948 |
T |
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| Q |
108 |
tctcctaatctttcgacaaaaagaaaaagagttggcacctcaccagatgctttgccttggttgagtaa |
175 |
Q |
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| T |
39683949 |
tctcctaatctttcgacaaaaagaaaaagagttggcacctcaccagatgctttgccttggttgagtaa |
39684016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 39689314 - 39689414
Alignment:
| Q |
8 |
gttgaattcttagaacaatctgctaaagagtatggataccaacaaggtgtgcttagaatcatatgtgatgttgacgactttaaagacattcttgctaaca |
107 |
Q |
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| T |
39689314 |
gttgaattgttggaacaatctgctaaagaatatggataccaacagggtgtgcttagaatcagacgtgatattgagatcttcaaagtcattcttgctaaca |
39689413 |
T |
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| Q |
108 |
t |
108 |
Q |
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| T |
39689414 |
t |
39689414 |
T |
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