View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5581-Insertion-2 (Length: 1096)
Name: NF5581-Insertion-2
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581-Insertion-2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 321 - 985
Target Start/End: Complemental strand, 29555332 - 29554683
Alignment:
| Q |
321 |
tcgtgacctgagggtcgtcgacaacaaaatgagcaggtgaagcggtatgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29555332 |
tcgtgacctgagggtcgtcgacaacaaaatgagcaggtgaagcggtatgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaa |
29555233 |
T |
|
| Q |
421 |
tagatctgccttgaagagctgcaacctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacctatacatattaaaataaaatca |
520 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29555232 |
tagatctgccttgaagaggtgcaacctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacctatacatattaaaataaaatca |
29555133 |
T |
|
| Q |
521 |
ctaattcannnnnnnnnnnnggacaagtaaaatcgctcactcattcataatgaaacacaaaataaacatgaaacaaaacattagacaagaagtaagtaat |
620 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29555132 |
ctaattcatatttattttttggacaagtaaaatcactcactcattcataatgaaacacaaaataaacatgaaacaaaacattagacaagaagtaagtaat |
29555033 |
T |
|
| Q |
621 |
attggttggtaaatactaacttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaa |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29555032 |
attggttggtaaatactaacttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaa |
29554933 |
T |
|
| Q |
721 |
gcaccagttacacaaactacctttccttcactgctattcatgttctcaatttcttatgatcttatcaatagactgatagatggtttattattctaaacaa |
820 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29554932 |
gcaccagttacacaaaccacctttccttcactgctattcattttctcaatttcttatgatcttatcaatagactgatagatggttta------------- |
29554846 |
T |
|
| Q |
821 |
gactttggtgaaatagcacctcaccaactaagttgctttttattattaaacaaataagtagcgggcaaatttcggtaccaatcctctatctctaactttt |
920 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
29554845 |
----ttggttaaatagcacctcaccaactaagttgctttttattattaaacaaataagtagcgggtaaatttcggtaccaatcctctatctctaactttt |
29554750 |
T |
|
| Q |
921 |
taggcccatccgttgaccataaaacataaaa-tgaatgttgaatttg-tgggaaatattgtgtatac |
985 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
29554749 |
taggcccatccgttgaccttaaaacataaaattgaatgttgaatttgttgggaaatattgtgtatac |
29554683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 29555608 - 29555387
Alignment:
| Q |
12 |
ggactatggttccccttaatcataatttgacttgtcattgaaccatatatatcataaataagaaacatccaattgcggaaaagttggttaaaagctgcta |
111 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||||||||||||| |
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|
| T |
29555608 |
ggactatggttctccttaatcataatttgacttatcattgaaccatatatatcatcaataagaaacacccaattgtggaaatgtaggttaaaagctgcta |
29555509 |
T |
|
| Q |
112 |
caattgtacaataagctaaacaggaattaattttaacaatgcaattgtccttcttgagggatttaaaagctttgcattgataatgtcactattattctaa |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29555508 |
aaattgtacaataagctaaacatcaattaattttaacaatgcaactgtccttcctgagggatttaaaagctttgcattgataatgtcactattattctaa |
29555409 |
T |
|
| Q |
212 |
gactcgaggatgtttagtacaa |
233 |
Q |
| |
|
||||||||||||| |||||||| |
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|
| T |
29555408 |
gactcgaggatgtatagtacaa |
29555387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 326 - 528
Target Start/End: Complemental strand, 29549118 - 29548916
Alignment:
| Q |
326 |
acctgagggtcgtcgacaacaaaatgagcaggtgaagcggtatgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaatagat |
425 |
Q |
| |
|
|||||||||||| ||| ||||||||| | |||||||| |||||||| |||||||| || |||||||||||| ||||| ||||||||||| | || || |
|
|
| T |
29549118 |
acctgagggtcggtgacgacaaaatgaacgggtgaagcagtatgaaagacaccatggcatccttgaataacagaatcaaaggaaccttcttcaagtaaat |
29549019 |
T |
|
| Q |
426 |
ctgccttgaagagctgcaacctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacctatacatattaaaataaaatcactaat |
525 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||||||||||||||| || || ||||||||||| | |||||||||| |||| |||| ||||||||| || |
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|
| T |
29549018 |
ctgccttaaagagttgcaacctttcctttgcaccatcaagtttaagcaagtgatcaaccttattggaattacctatagatatgaaaaaaaaatcactcat |
29548919 |
T |
|
| Q |
526 |
tca |
528 |
Q |
| |
|
||| |
|
|
| T |
29548918 |
tca |
29548916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 646 - 751
Target Start/End: Complemental strand, 29548840 - 29548735
Alignment:
| Q |
646 |
tcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacacaaactacctttc |
745 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || ||||| ||||||| |||||||||||| ||||||||||||| |||||||| || ||||| | |
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|
| T |
29548840 |
tcacgaacagtggctctaacagtataaccacgttggagaagaaacttgacaacccatgaagcaatgaaacctgaagcacctgttacacacacaaccttac |
29548741 |
T |
|
| Q |
746 |
cttcac |
751 |
Q |
| |
|
|||||| |
|
|
| T |
29548740 |
cttcac |
29548735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 675 - 750
Target Start/End: Complemental strand, 29559194 - 29559119
Alignment:
| Q |
675 |
acgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacacaaactacctttccttca |
750 |
Q |
| |
|
|||||| || ||||| || ||||||||||||||||||||||||||| |||| |||||||| || |||||||||||| |
|
|
| T |
29559194 |
acgttggagaagaaacttaacaagccatgaagcaatataacctgaaccacctgttacacacacaacctttccttca |
29559119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 344 - 499
Target Start/End: Complemental strand, 26101092 - 26100937
Alignment:
| Q |
344 |
acaaaatgagcaggtgaagcggtatgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaatagatctgccttgaagagctgca |
443 |
Q |
| |
|
|||||| || |||||||||| |||||||| ||||||| |||||| | || |||| |||||| ||||||||||| || ||||||||||| ||||| |||| |
|
|
| T |
26101092 |
acaaaacgaacaggtgaagcagtatgaaagacaccatcacaaccctcaacaacagagtcaaaggaaccttcttccaagagatctgccttaaagagttgca |
26100993 |
T |
|
| Q |
444 |
acctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacct |
499 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
26100992 |
acctctcctttgcaccatcaagtttaagcaagtggtcaacctttttaggattacct |
26100937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 344 - 499
Target Start/End: Complemental strand, 25933573 - 25933418
Alignment:
| Q |
344 |
acaaaatgagcaggtgaagcggtatgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaatagatctgccttgaagagctgca |
443 |
Q |
| |
|
|||||| || |||||||||| |||||||| ||||||| |||||| | || |||| |||||| ||||||||||| || ||||||||||| ||||| |||| |
|
|
| T |
25933573 |
acaaaacgaacaggtgaagcagtatgaaagacaccatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgca |
25933474 |
T |
|
| Q |
444 |
acctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacct |
499 |
Q |
| |
|
|||| ||||| |||||||||||||||| || || |||||||| | || ||||||| |
|
|
| T |
25933473 |
acctctcctttgcaccatcaagtttaaccaagtgatcaaccttttcagaattacct |
25933418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 639 - 749
Target Start/End: Complemental strand, 26100818 - 26100708
Alignment:
| Q |
639 |
acttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacacaaact |
738 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||||||||||| || || || ||||||| ||||||||| ||| |||| |||||||| || ||||| || |
|
|
| T |
26100818 |
acttgggtcacggacagtggctcggacagtgtaaccacgttggagtaggaacttgacaatccatgaagctataaaaccagaagcacctgtcacacacacc |
26100719 |
T |
|
| Q |
739 |
acctttccttc |
749 |
Q |
| |
|
||||||||||| |
|
|
| T |
26100718 |
acctttccttc |
26100708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 639 - 749
Target Start/End: Complemental strand, 25933311 - 25933201
Alignment:
| Q |
639 |
acttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacacaaact |
738 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||||||||||| |||||||||||| || |||| ||||||||||||| |||| |||||| || ||||| || |
|
|
| T |
25933311 |
acttgggtgacgaacagttgctctgacagtgtaaccacattgaaggagaaacttaacaatccatgaagcaataaaaccattagcacctgtcacacacacc |
25933212 |
T |
|
| Q |
739 |
acctttccttc |
749 |
Q |
| |
|
|| |||||||| |
|
|
| T |
25933211 |
acttttccttc |
25933201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 368 - 486
Target Start/End: Complemental strand, 87923 - 87805
Alignment:
| Q |
368 |
tgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaatagatctgccttgaagagctgcaacctttccttagcaccatcaagtt |
467 |
Q |
| |
|
||||| ||||||||||| ||||||| |||| ||||| | ||||||||| | ||||| ||||||||| || ||||| || ||||||||||||||||| | |
|
|
| T |
87923 |
tgaaagacaccatgacagccttgaacaacagaatcaaaggcaccttcttcaagtagatttgccttgaacagttgcaatctctccttagcaccatcaagct |
87824 |
T |
|
| Q |
468 |
taagtaaatggtcaacctt |
486 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
87823 |
taaccaagtggtcaacctt |
87805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 639 - 734
Target Start/End: Complemental strand, 87594 - 87499
Alignment:
| Q |
639 |
acttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacaca |
734 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||| ||||| ||||| || ||| ||| ||||||||||| || ||||||||||| ||||| ||||| |
|
|
| T |
87594 |
acttggatcgcgaacggtggctttaacagtgtagccacgatgaagaagcaatcggacgagccatgaagcgatgtaacctgaagcgccagtcacaca |
87499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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