View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5581-Insertion-3 (Length: 920)
Name: NF5581-Insertion-3
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 187 - 812
Target Start/End: Original strand, 29793862 - 29794488
Alignment:
| Q |
187 |
ttggttttgtggtaacaaatattgattttgaattaaatgattctgtatagtgagttgaatgtttattgctttatatttggatacaataatgtagagtggg |
286 |
Q |
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| T |
29793862 |
ttggttttgtggtaacaaatattgattttgaatgaaatgattctgtatagtgagttgaatgtttattggtttatatttggatacaataatgtagagtagg |
29793961 |
T |
|
| Q |
287 |
acgataaatttgagggtaaaaatcacaatagtagacgcaaaatttccaaattgtcgcttaagttagaatctattctcgaggcgaaatctattctactgga |
386 |
Q |
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| T |
29793962 |
acgataaatttgagggtaaaaatcacaatagtagaggcaaaatttccaaattgtcgctaaagttagaatctattctcgaggcgaaatctattctactgga |
29794061 |
T |
|
| Q |
387 |
acatccaaacatgttaaaatcaatattacactactagaataaatcttgtgactccttcaaaagagaaaccaaacatatacatgaacata-gaataactta |
485 |
Q |
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| T |
29794062 |
acatccaaacatgttaaaatcaatattacactactagaataaattttg--actccttcaaaagagaaaccaaacatatacacgaatataagaataactta |
29794159 |
T |
|
| Q |
486 |
agcacttgggtttcagggtaggggaattgtatgctgttgtgtttttattaata--gacaaatgttagtaagttagtggttaatgttagtttgtagatcat |
583 |
Q |
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| T |
29794160 |
ggtacttgggtttcaggttaggggaattgtatgctgttgtgtttttattaaaacagacaaatgttagtaagttagtggttaatgttagtttgtagatcat |
29794259 |
T |
|
| Q |
584 |
gccttgcatctcttgcttagcccaacaatcgagctacctacgtgtactatgttattaagattaattcatttagttggaataacaatgattaattgaatgg |
683 |
Q |
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| T |
29794260 |
gccttgcatctcttgcttagcccaacaatcgagctacctacgtgtactatgttattaagattaattcatttaattggaattacaatgattaattgaatgg |
29794359 |
T |
|
| Q |
684 |
ccactcgggaagtggagcttgttctaacctgagtagtgaatcccagatagaggcgcggagtggccgaccccacaagtgggaaagcgggatcccaggtagt |
783 |
Q |
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| T |
29794360 |
ccactcgggcagtggagcttgttctaacctgagtagtgaatcccagatagagacgcggagtggccgaccccacaagtgggaaagcgggatcccaggtagc |
29794459 |
T |
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| Q |
784 |
gggagtgcgaaggataaattgtataagaa |
812 |
Q |
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| T |
29794460 |
gggagtgcgaaggatagattgtataagaa |
29794488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 29793626 - 29793791
Alignment:
| Q |
8 |
ggattgttttcttggtgggtttgctgctgggattgtaaagggtttgggtgtgtatgatgctgctttgttggggaacttttttggttctttggctgttgca |
107 |
Q |
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| T |
29793626 |
ggattgttttcttggtgggtttgctgctgggattgtaaagggtttgggtgtgtatgatgctgctttgttggggaacttttttggttctttggctgttgca |
29793725 |
T |
|
| Q |
108 |
caagttgggccactcaaaattgatttgaaattggttcaggtttgtttctccgatccatttttccgt |
173 |
Q |
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| T |
29793726 |
caagttgggccacccaaaattgatttgaacttggttcaggtttgtttctccaatccatttttccgt |
29793791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 564
Target Start/End: Complemental strand, 11877724 - 11877687
Alignment:
| Q |
527 |
tttttattaatagacaaatgttagtaagttagtggtta |
564 |
Q |
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| T |
11877724 |
tttttttttatagacaaatgttagtaagttagtggtta |
11877687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 564
Target Start/End: Complemental strand, 11892731 - 11892694
Alignment:
| Q |
527 |
tttttattaatagacaaatgttagtaagttagtggtta |
564 |
Q |
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| T |
11892731 |
tttttttttatagacaaatgttagtaagttagtggtta |
11892694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 564
Target Start/End: Complemental strand, 11895140 - 11895103
Alignment:
| Q |
527 |
tttttattaatagacaaatgttagtaagttagtggtta |
564 |
Q |
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| T |
11895140 |
tttttttttatagacaaatgttagtaagttagtggtta |
11895103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 764
Target Start/End: Original strand, 31462367 - 31462416
Alignment:
| Q |
715 |
agtagtgaatcccagatagaggcgcggagtggccgaccccacaagtggga |
764 |
Q |
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| T |
31462367 |
agtagtcaatcccagatagcggtgcgtagtggccgaccccaaaagtggga |
31462416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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