View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5581-Insertion-7 (Length: 316)

Name: NF5581-Insertion-7
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5581-Insertion-7
NF5581-Insertion-7
[»] chr1 (3 HSPs)
chr1 (8-316)||(38813918-38814226)
chr1 (196-314)||(38818506-38818624)
chr1 (195-316)||(38820731-38820852)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 38813918 - 38814226
Alignment:
Q  8 ctaacagtcatcgaaccaaagttatcgggcttgatgctgaatggcttctgttacatggcacggagccaggaacagttaccaaatccaaatgtgcaaccct 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38813918 ctaacaatcatcgaaccaaagttatcgggcttgatgctgaatggcttctgttacatggcacggagccaggaacagttaccaaatccaaatgtgcaacact 38814017  T
Q  108 gcagctctgtgatggacactcgtgtcttatcattcacctaaatggtttcaattgctttgagagttgggcatatgattctgtccacaaatcactgcttaat 207  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38814018 gcagttctgtgatggacactcgtgtcttatcattcacctaaatggtttcaattgctttgagagttgggcatatgattctgtccacaaatcactgcttaat 38814117  T
Q  208 tttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtatggatttggatgtagaaatgctgttg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38814118 tttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtatggatttggatgtagaaatgctgttg 38814217  T
Q  308 aacttggac 316  Q
    |||||||||    
T  38814218 aacttggac 38814226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 38818506 - 38818624
Alignment:
Q  196 tcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtatggatttggatgta 295  Q
    ||||| ||||| ||||||||| | ||||||||||| ||||||||||||||||||||||| ||| |||| |||||||| |   | |||||  |||||||||    
T  38818506 tcactacttaactttcttcgtatgccaaatgttacctttgttggagttggaatcaaagacaatgtggccaagttggaaacatactatgggattggatgta 38818605  T
Q  296 gaaatgctgttgaacttgg 314  Q
    |||||||||| ||||||||    
T  38818606 gaaatgctgtggaacttgg 38818624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 316
Target Start/End: Original strand, 38820731 - 38820852
Alignment:
Q  195 atcactgcttaattttcttcgtctcccaaatgttacatttgttggagttggaatcaaagagaatttggctaagttggagaagcagtatggatttggatgt 294  Q
    |||| ||||||||||||||||||| ||| ||  ||| |||||||| ||||| |||||  | |||||||||||  | |||||| | |||||  || ||||     
T  38820731 atcattgcttaattttcttcgtcttccagattatacctttgttggtgttggtatcaatcataatttggctaaacttgagaaggaatatggggttagatgc 38820830  T
Q  295 agaaatgctgttgaacttggac 316  Q
    ||||||||||| ||||||||||    
T  38820831 agaaatgctgtggaacttggac 38820852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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