View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5581_high_5 (Length: 340)
Name: NF5581_high_5
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 16970664 - 16970439
Alignment:
| Q |
21 |
tcacaaggagttagcaattgtcatggacctctatctcacgagcagaacaaagtaatacggaaacagaaaagacaatggaatgcaacatggctagctctac |
120 |
Q |
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| T |
16970664 |
tcacaaggagttagcaattgtcatggacctctatctcacgagcagaacaaagtaatacggaaacagaaaagacaatggaatgcaacatggctagctctac |
16970565 |
T |
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| Q |
121 |
tactatactgagtaaaaatcttgtatgattatggccataagttgctttttaaaggaatagtatggtggtatgttgcttgcagatgttgttaggggtccaa |
220 |
Q |
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| T |
16970564 |
tactatactgagtaaaaatcttgtttgattatggccattagttgctttttaaaggaatagtatggtggtatgttgcttgcagatgttgttagtggtccaa |
16970465 |
T |
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| Q |
221 |
ataattagaggcttccaataacaata |
246 |
Q |
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| T |
16970464 |
ataattaaaggcttccaataacaata |
16970439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 16964808 - 16964760
Alignment:
| Q |
254 |
ttaaaggtgaaataagagagtcttgggcttggtttcttgagatattaat |
302 |
Q |
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| T |
16964808 |
ttaaaggtgaaataagagggtcttgggcttgattttttgagaaattaat |
16964760 |
T |
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