View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5581_low_1 (Length: 530)
Name: NF5581_low_1
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 915587 - 915329
Alignment:
| Q |
20 |
acttcgtaagtcaaaagtgacgtttgatgaattttttaattgttaggttagatattccacaaataacaaatgacagccacactctttaaatatagttttt |
119 |
Q |
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| T |
915587 |
acttcgtaagtcaaaagtgacgtttgatgaattttttaattgttaggttagatattccacaaataacaaatgacagccacactctttaaatatagttttt |
915488 |
T |
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| Q |
120 |
tagatccttgagtgagatcttaagttactcccactaaacaagttggatcaatattttactaagagggtcaacataaatcaataaccaaaattatatcaca |
219 |
Q |
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| T |
915487 |
tagatccttgagtgagatcttaagttactcccactaaacaagttggatcaatattttactaagagggtcaacataaatcaataaccaaaattatatcaca |
915388 |
T |
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| Q |
220 |
aaagtatcttgccaaagctctcaaccataaacaaagcagaacattaaatgattattaaa |
278 |
Q |
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| T |
915387 |
aaagtatcttgccaaagctctcaaccataaacaaagcagaacattaaatgattattaaa |
915329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 311 - 522
Target Start/End: Complemental strand, 915275 - 915064
Alignment:
| Q |
311 |
ataccaactataataggcaatagcaacattatgctggtccaagtggaacttgacttggatacttcacaccaataacatggtcnnnnnnnnnnnnctacag |
410 |
Q |
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| T |
915275 |
ataccaactataattggcaatagcaacattatgctggtccaagtggaacttgacttggatacttcacaccaatagcatggtcaaaaaagaaaaactacag |
915176 |
T |
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| Q |
411 |
ttgaccattaaggctgcgcctattttgattatggatgagaaacgcgcactacacactcatcagtcatcatctaaggcaactcttgactctcaccaaggtt |
510 |
Q |
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| T |
915175 |
ttgacaattaaggctgcgcctattttgattatggatgagaaacgcgcactacacactcaccagtcatcatctaagacaactcttgactctcaccaaggtt |
915076 |
T |
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| Q |
511 |
tagacctatgct |
522 |
Q |
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| T |
915075 |
tagacctatgct |
915064 |
T |
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