View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5581_low_11 (Length: 262)
Name: NF5581_low_11
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 38813922 - 38813686
Alignment:
| Q |
19 |
gttagaacgatgcaagaacgatcttatatgattctcaatcttttgctcatcggatgttgctcgagtcttgatgtgtactccattcagctcaaacgatccc |
118 |
Q |
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| T |
38813922 |
gttagaacgatgcaagaacgatcttatatgattctcaatcttttgctcatcggatgttgctctggtcttgatgtgtactccattcagctcaaacgatccc |
38813823 |
T |
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| Q |
119 |
acataacccatgtgtgctgaagaagtttgtaaggtggcaattcaataaagcattgcaagtgatagagagacgaggactatttataggcatataacttgcg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38813822 |
acataacccatgtgtgctgaagaagtttgtaaggtggcaattcaataaagcattgcaagtgatagagagacaaggactatttataggcatataacttgcg |
38813723 |
T |
|
| Q |
219 |
gtaagctgaaaaggcatagtaatcgagagtataatct |
255 |
Q |
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| T |
38813722 |
gtaagctgaaaaggcatagtaatcgagagtagaatct |
38813686 |
T |
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